View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14723_high_2 (Length: 739)

Name: NF14723_high_2
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14723_high_2
NF14723_high_2
[»] chr7 (1 HSPs)
chr7 (1-725)||(43190872-43191603)


Alignment Details
Target: chr7 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 725
Target Start/End: Complemental strand, 43191603 - 43190872
Alignment:
Q  1 tcgcgttttaaaatatttcatgccccgtcaaatagtaaggtgatcgtatttaaccattgtcatcactcgatttcaaataatnnnnnnnnnn-taaagtag 99  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||| ||||    
T  43191603 tcgcgttttgaaatatttcatgcctcgtcaaatagtaaggtgatcgtatttaaccattgtcatcactcgatttcaaataaaaaaaaaaacaataacgtag 43191504  T
Q  100 gtccaagagacagcaacatatgttgtgatc---gtccacaatgaaaagtctataaatcaataaatccaaaagaattaacgagttcatcatagaagttgtc 196  Q
    ||||||||||||||||||||||||||||||   ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43191503 gtccaagagacagcaacatatgttgtgatcatcgtccacagtgaaaagt-tattaatcaataaatccaaaagaattaacgagttcatcatagaagttgtc 43191405  T
Q  197 ttgtnnnnnnnn-gaccatcaacaccaaccctaaacagtggtagaatataaagagaagtaaagatgaaaagggataaagaaattgaatgattttgattta 295  Q
    ||||         ||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43191404 ttgtaaaaaaaaagaccaacaacaccaaccctaaacagtggcagaatataaagagaagtaaagacgaaaagggataaagaaattgaatgattttgattta 43191305  T
Q  296 aaattacactttatttcagatactgaaataagggtttactcgaccatagtaaacccatcatttctgcccctggctgatgtggaattatcatgtgcaactc 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43191304 aaattacactttatttcagatactgaaataagggtttactcgaccatagtaaacccatcatttctgcccctggctgatgtggaattatcatgtgcaactc 43191205  T
Q  396 acgagaaaagttggagaacacatcaacacatttggcggaggattaacaagtgattaatgatttttgaggtaactaactaac----ataagtaacattttt 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    ||||| |||||||||    
T  43191204 acgagaaaagttggagaacacatcaacacatttggcggaggattaacaagtgattaatgatttt-gaggtaactaactaactaacataagaaacattttt 43191106  T
Q  492 ggagttcttaataatttactcaatccatatactagtttgacaatacacgatgctttcagtgagacaaataatgtttgtagatgtttagcctctaaatagc 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  43191105 ggagttcttaataatttactcaatccatatactagtttgacaatacacgatgctttcagtgagacaaataatgtttgtagatgtttagcatataaatagc 43191006  T
Q  592 aatccctcttagttcttcttcaatggaagtagctattaagctttgcatgttgtgataagttacaagtatgtttgtagaagttttacatctcaatagcgag 691  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43191005 aatccctcttagttcttcttcaatggaagtagctattaagctttgcatgttgtgataagttacaagtatgtttgtagaagttttacatctcaatggcgag 43190906  T
Q  692 ctctcatatttcttctccaatgaaagtaataact 725  Q
    ||||| ||||||||||||||||||||||||||||    
T  43190905 ctctcttatttcttctccaatgaaagtaataact 43190872  T

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