View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_high_23 (Length: 327)
Name: NF14723_high_23
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 5683817 - 5684107
Alignment:
| Q |
20 |
aacacacacggcttcaatagtagcagggcgagcagttcaaaatgcatcagcactcggaggcttcgctagaggcacagcctctggtggagccccattagct |
119 |
Q |
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| T |
5683817 |
aacacacacggcttcaatagtagcagggcgagcagttcaaaatgcatcagcactcggaggcttcgctagaggcacagcctctggtggagccccattagct |
5683916 |
T |
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| Q |
120 |
cgccttgcaatatacaaagcatgttggccaataaaaggaaaaccaaaaaatgatggaaatgtttgcactaacattgatatgcttaaagctatagatgatg |
219 |
Q |
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| T |
5683917 |
cgccttgcaatatacaaagcatgttggccaataaaaggaaaaccaaaaaatgatggaaatgtttgcactaacattgatatgcttaaagctatagatgatg |
5684016 |
T |
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| Q |
220 |
caattgaagatggtgttgatgttataaacctttccattgggtttcctgcgccattgaaatatgaggatgatgtgattgctaagggtgcatt |
310 |
Q |
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| T |
5684017 |
caattgaagatggtgttgatgttataaacctttccattgggtttcctgcgccattgaaatatgaggatgatgtgattgctaagggtgcatt |
5684107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 5693693 - 5693983
Alignment:
| Q |
20 |
aacacacacggcttcaatagtagcagggcgagcagttcaaaatgcatcagcactcggaggcttcgctagaggcacagcctctggtggagccccattagct |
119 |
Q |
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||||||||| |||||||||| ||||||||| | || ||||||| ||||| ||||||||||||| || || ||||||||||| |||||||| ||||| |
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| T |
5693693 |
aacacacacatcttcaatagtggcagggcgaaccattaaaaatgctgcagcaatcggaggcttcgccagcggtacagcctctggcggagcccccttagcc |
5693792 |
T |
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| Q |
120 |
cgccttgcaatatacaaagcatgttggccaataaaaggaaaaccaaaaaatgatggaaatgtttgcactaacattgatatgcttaaagctatagatgatg |
219 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||| |||| | ||||||||||||||||||||||||||||||| |
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| T |
5693793 |
cgccttgccatatacaaagcatgttggccaatcaaaggaaaaccaaaaaacgaaggaaacacttgcgcaaacattgatatgcttaaagctatagatgatg |
5693892 |
T |
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| Q |
220 |
caattgaagatggtgttgatgttataaacctttccattgggtttcctgcgccattgaaatatgaggatgatgtgattgctaagggtgcatt |
310 |
Q |
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| T |
5693893 |
caattgaagatggtgttgatgttttaagcatttccatagggcattatggtccattgaaatatgaagatgatgtgattgctaagggtgcatt |
5693983 |
T |
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