View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_high_26 (Length: 274)
Name: NF14723_high_26
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 108 - 258
Target Start/End: Original strand, 35999923 - 36000073
Alignment:
| Q |
108 |
aacaatatggattttttagatcctcaatctgatnnnnnnnttgaaggatagaaaacttgaagaaatagaagctcaaattggttttgtacatttgagttgg |
207 |
Q |
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| T |
35999923 |
aacaatatggattttttagatcctcaatctgataaaaaatttgaaggatagaaaacttgaagaaatagaagctcaaattggttttgtacatttgagttgg |
36000022 |
T |
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| Q |
208 |
attcagccatcattctaagagttagtgcatgagtttataaagactttcctg |
258 |
Q |
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| T |
36000023 |
attcagccatcattctaagagttagtgtgtgaggttataaagactttcctg |
36000073 |
T |
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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 35999785 - 35999882
Alignment:
| Q |
9 |
atgaacgatataaatgttgaagaattcgaagccgagaaatacattgaaacttccaaagttgataacagtgtaactgaaaataattcatgtttcattga |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
35999785 |
atgaacgatataaatgttgaagaattcgaagccgagaaatacattgaaacttccaaagttgataacagtggaactgaaaataattcatgtttcgttga |
35999882 |
T |
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