View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_high_28 (Length: 250)
Name: NF14723_high_28
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 14869779 - 14869560
Alignment:
| Q |
25 |
catgctcccaaaactgacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctcta |
124 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869779 |
catgctcccaaaactaacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctcta |
14869680 |
T |
|
| Q |
125 |
cccgctttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgtac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14869679 |
cccgctttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgtac |
14869580 |
T |
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| Q |
225 |
tctcaatctcatgactatca |
244 |
Q |
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|||||||||||||||||||| |
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| T |
14869579 |
tctcaatctcatgactatca |
14869560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 16908886 - 16909097
Alignment:
| Q |
25 |
catgctcccaaaactgacatagagaacagaatcatctttcttagaatcaagccacttaagcactccttcatcttcatcttcttctttaccatgccctcta |
124 |
Q |
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||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
16908886 |
catgctcccaaaactaacataaagaacagaatcatatttctttgaatcaagccacttaagcaccccttcttcttcatcttcttctttaccatgtcctcta |
16908985 |
T |
|
| Q |
125 |
cccgctttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcatatgtac |
224 |
Q |
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| T |
16908986 |
ccagctttatctgaatcatctttgttcatccacaaagaaactggtcccacactccaactcttacttcccatggctatcttgtaatagtcctcataagtac |
16909085 |
T |
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| Q |
225 |
tctcaatctcat |
236 |
Q |
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|||||||||| |
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| T |
16909086 |
cttcaatctcat |
16909097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 12613389 - 12613301
Alignment:
| Q |
131 |
ttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcata |
219 |
Q |
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||||| ||| |||||||||| |||||| ||||||||||| | |||||||| ||| ||||| | ||| ||||||||||||||||||| |
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| T |
12613389 |
ttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacactttgttccaaatgcattcttgtaatgctcctcata |
12613301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 12613492 - 12613434
Alignment:
| Q |
25 |
catgctcccaaaactgacatagagaacagaatcatctttcttagaatcaagccacttaa |
83 |
Q |
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|||||| |||||||| |||||||||||||||| |||||||| |||| |||||| |||| |
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| T |
12613492 |
catgctaccaaaacttacatagagaacagaattctctttcttggaattaagccatttaa |
12613434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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