View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14723_high_29 (Length: 236)

Name: NF14723_high_29
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14723_high_29
NF14723_high_29
[»] chr7 (11 HSPs)
chr7 (93-213)||(31445845-31445964)
chr7 (90-213)||(21486634-21486757)
chr7 (90-213)||(23017481-23017604)
chr7 (97-185)||(42611016-42611107)
chr7 (104-170)||(42043813-42043879)
chr7 (116-213)||(43172599-43172696)
chr7 (143-213)||(16710072-16710142)
chr7 (143-213)||(17684308-17684378)
chr7 (138-213)||(5771662-5771737)
chr7 (104-154)||(4639455-4639505)
chr7 (104-154)||(14741921-14741971)
[»] chr4 (15 HSPs)
chr4 (97-213)||(32890381-32890497)
chr4 (97-213)||(29509542-29509658)
chr4 (97-213)||(46862425-46862541)
chr4 (98-213)||(24965971-24966087)
chr4 (108-213)||(12754822-12754927)
chr4 (93-190)||(33139296-33139393)
chr4 (106-209)||(14334826-14334929)
chr4 (102-213)||(26955760-26955871)
chr4 (97-213)||(35517998-35518114)
chr4 (97-155)||(26490814-26490872)
chr4 (116-213)||(50517617-50517714)
chr4 (93-155)||(4511528-4511590)
chr4 (104-154)||(8084661-8084711)
chr4 (104-154)||(29469633-29469683)
chr4 (141-213)||(22480176-22480248)
[»] scaffold0013 (1 HSPs)
scaffold0013 (93-213)||(89785-89905)
[»] chr6 (9 HSPs)
chr6 (97-213)||(31975234-31975350)
chr6 (91-213)||(31534587-31534709)
chr6 (119-213)||(16439218-16439312)
chr6 (97-171)||(2607412-2607486)
chr6 (93-158)||(24195549-24195614)
chr6 (103-170)||(15381129-15381196)
chr6 (119-183)||(28900350-28900414)
chr6 (129-213)||(32567808-32567892)
chr6 (147-213)||(2607485-2607551)
[»] chr2 (11 HSPs)
chr2 (93-213)||(38295215-38295335)
chr2 (93-213)||(34342744-34342865)
chr2 (93-213)||(2308034-2308154)
chr2 (97-213)||(9731448-9731564)
chr2 (97-213)||(40830137-40830252)
chr2 (99-213)||(42242305-42242419)
chr2 (103-213)||(30850867-30850977)
chr2 (97-213)||(31846647-31846763)
chr2 (119-213)||(18727098-18727192)
chr2 (141-213)||(2103814-2103886)
chr2 (104-154)||(18899484-18899534)
[»] chr3 (10 HSPs)
chr3 (97-213)||(21385968-21386084)
chr3 (97-213)||(49458870-49458986)
chr3 (95-213)||(4962190-4962308)
chr3 (93-213)||(33693766-33693889)
chr3 (119-213)||(7437038-7437132)
chr3 (103-209)||(1666391-1666497)
chr3 (116-200)||(43173417-43173501)
chr3 (141-213)||(32766503-32766575)
chr3 (104-154)||(49296584-49296634)
chr3 (104-154)||(53836428-53836478)
[»] chr8 (20 HSPs)
chr8 (108-213)||(3007300-3007405)
chr8 (97-213)||(8029334-8029449)
chr8 (97-213)||(42423710-42423826)
chr8 (97-213)||(27974446-27974563)
chr8 (97-213)||(28031715-28031832)
chr8 (101-213)||(44977239-44977351)
chr8 (98-213)||(12737564-12737678)
chr8 (97-198)||(12521900-12522001)
chr8 (97-213)||(27869417-27869533)
chr8 (97-213)||(6387381-6387497)
chr8 (119-211)||(18984857-18984949)
chr8 (108-200)||(41394379-41394471)
chr8 (119-213)||(24082716-24082810)
chr8 (97-155)||(27878149-27878207)
chr8 (97-155)||(28018330-28018388)
chr8 (97-155)||(27915093-27915151)
chr8 (97-155)||(27961512-27961570)
chr8 (161-213)||(27876573-27876625)
chr8 (161-213)||(28016754-28016806)
chr8 (104-154)||(19484683-19484733)
[»] chr1 (22 HSPs)
chr1 (97-213)||(49452540-49452656)
chr1 (108-213)||(32759560-32759665)
chr1 (97-213)||(3593741-3593857)
chr1 (97-213)||(47371049-47371165)
chr1 (93-213)||(49236477-49236597)
chr1 (93-213)||(48965996-48966109)
chr1 (97-170)||(28403501-28403574)
chr1 (110-213)||(35176755-35176858)
chr1 (103-213)||(2292753-2292863)
chr1 (102-209)||(8122461-8122565)
chr1 (90-170)||(25254028-25254108)
chr1 (110-213)||(15927574-15927676)
chr1 (127-212)||(19863426-19863511)
chr1 (97-155)||(19863362-19863420)
chr1 (119-185)||(42303897-42303963)
chr1 (162-213)||(28403430-28403481)
chr1 (104-154)||(1242862-1242912)
chr1 (104-154)||(8147832-8147882)
chr1 (104-154)||(11578681-11578731)
chr1 (104-154)||(26758106-26758156)
chr1 (104-154)||(41353911-41353961)
chr1 (109-154)||(5208854-5208899)
[»] chr5 (6 HSPs)
chr5 (97-213)||(29716383-29716497)
chr5 (103-213)||(15286001-15286111)
chr5 (104-154)||(5650357-5650407)
chr5 (104-154)||(37797699-37797749)
chr5 (104-154)||(28622749-28622799)
chr5 (116-212)||(35701748-35701843)
[»] scaffold0573 (1 HSPs)
scaffold0573 (119-183)||(9380-9444)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 31445845 - 31445964
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggt 192  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31445845 atggcttaaacttagagactt-taaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggt 31445943  T
Q  193 ataatttgtctttgtaattaa 213  Q
    |||||||||||||||||||||    
T  31445944 ataatttgtctttgtaattaa 31445964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 21486634 - 21486757
Alignment:
Q  90 tgaatggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtacttt 189  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||| |||| || ||||||||||| |||    
T  21486634 tgaatgacttaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagtataacgttttattatggtagttt 21486733  T
Q  190 ggtataatttgtctttgtaattaa 213  Q
    ||||||| ||||||||||||||||    
T  21486734 ggtataacttgtctttgtaattaa 21486757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 23017481 - 23017604
Alignment:
Q  90 tgaatggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtacttt 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||| |||    
T  23017481 tgaatgacttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctaagttgagcataacgttttattatggtagttt 23017580  T
Q  190 ggtataatttgtctttgtaattaa 213  Q
    |||||||| ||  |||||||||||    
T  23017581 ggtataatctgcttttgtaattaa 23017604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 42611016 - 42611107
Alignment:
Q  97 cttaaacttagagacttatgaaact--tatgattttgtgcattaatttttgt-attttgatgctagattgagcataatgtattattatggta 185  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||  || |||||||||| |||||||||||    
T  42611016 cttaaacttagagacttatgaaacttatatgattttgtgcattaatttttgtaattttgatgctaagttaagcataatgttttattatggta 42611107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 42043813 - 42043879
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataa 170  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  42043813 ttagagatttataaaacttatgattttgtgcattaatttttgtattttgatgctaacttgagcataa 42043879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 43172599 - 43172696
Alignment:
Q  116 gaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||| ||||| ||||||||||||||||| || ||  |||| ||| | || ||||||||||| |||||||||||||  ||||||||||||    
T  43172599 gaaacttatgattgtgtgcgttaatttttgtattttggtgttaagttgaacattacgttttattatggtagtttggtataattttcctttgtaattaa 43172696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 16710072 - 16710142
Alignment:
Q  143 ttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||||||  ||||||||||  | |||||||| || |||||||||||||| ||||| ||||||    
T  16710072 ttgtattttgatgctaagttgagcataacattttattatgatagtttggtataatttgcctttgcaattaa 16710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 17684308 - 17684378
Alignment:
Q  143 ttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||||||  ||||||||||  | |||||||| || |||||||||||||| ||||| ||||||    
T  17684308 ttgtattttgatgctaagttgagcataacattttattatgatagtttggtataatttgcctttgcaattaa 17684378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 5771737 - 5771662
Alignment:
Q  138 aatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    |||||||||||||||||| ||  | || ||||| || ||| |||| || |||||||||||||| ||||||||||||    
T  5771737 aatttttgtattttgatgttaagtggatcataacgttttactatgatagtttggtataatttgcctttgtaattaa 5771662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 4639505 - 4639455
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  4639505 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 4639455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 14741921 - 14741971
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  14741921 ttagagacttatgaaacctatgtttttgtgtgttaatttttctattttgat 14741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 32890381 - 32890497
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  32890381 cttaaacttagagacttatgaaacttatgattttgggcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttggtataa 32890480  T
Q  197 tttgtctttgtaattaa 213  Q
    |||||| ||||||||||    
T  32890481 tttgtccttgtaattaa 32890497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 29509658 - 29509542
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  29509658 cttaaacttagagactcatgaaacttatgattttgggcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttggtataa 29509559  T
Q  197 tttgtctttgtaattaa 213  Q
    |||| | ||||||||||    
T  29509558 tttgcccttgtaattaa 29509542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 46862541 - 46862425
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||  ||||| ||||||| ||||||||||| |||| |||||    
T  46862541 cttaaacttagagacttatgaaacttatgattttgtgtgttaatctttgtattttgatgctaagttgagtataatgttttattatggtagtttgatataa 46862442  T
Q  197 tttgtctttgtaattaa 213  Q
    |||| ||||||||||||    
T  46862441 tttgcctttgtaattaa 46862425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 24966087 - 24965971
Alignment:
Q  98 ttaaactta-gagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||  |||||||||| || ||||||||||| ||||||||||    
T  24966087 ttaaacttaagagacttatgaaacttatgattttgtgcgttaattttggtattttgatgttaagttgagcataacgttttattatggtagtttggtataa 24965988  T
Q  197 tttgtctttgtaattaa 213  Q
    |||||| ||||||||||    
T  24965987 tttgtcgttgtaattaa 24965971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 12754822 - 12754927
Alignment:
Q  108 agacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgt 207  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||| || ||||||||||| |||||||||||||| |||||     
T  12754822 agacttatgaaacttatgattttgtgcgttaatttttgtattttgatgttaggttgagcgtaacgttttattatggtagtttggtataatttgcctttga 12754921  T
Q  208 aattaa 213  Q
    ||||||    
T  12754922 aattaa 12754927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 33139296 - 33139393
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttg 190  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| || ||||||||||| ||||    
T  33139296 atggattaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctacgttgagcataacgttttattatggtagtttg 33139393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 14334826 - 14334929
Alignment:
Q  106 agagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtcttt 205  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||| || |||| |||||| |||| ||||||||| ||||    
T  14334826 agagacttatgaaacttatgattttttgcattaatttttgtattttgatgcttagttgagcataacgttttataatggtagtttgatataatttgccttt 14334925  T
Q  206 gtaa 209  Q
    ||||    
T  14334926 gtaa 14334929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 26955760 - 26955871
Alignment:
Q  102 acttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgt 201  Q
    ||||||||||||| |||  |||||||||||||| ||| ||||| |||||||||||||  ||||||||||||| ||||||||||| |||| |||| ||| |    
T  26955760 acttagagacttaagaagattatgattttgtgcgttagtttttatattttgatgctaagttgagcataatgttttattatggtagtttgatatattttat 26955859  T
Q  202 ctttgtaattaa 213  Q
    ||||||||||||    
T  26955860 ctttgtaattaa 26955871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 35518114 - 35517998
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||| ||||||||||||||||||||||||||| ||   ||||||||||||||||||||||  |||| |||||| | ||||||||||| | |||| |||    
T  35518114 cttaaatttagagacttatgaaacttatgattttatgtgctaatttttgtattttgatgctaagttgaacataatattttattatggtaatctggtttaa 35518015  T
Q  197 tttgtctttgtaattaa 213  Q
     ||| ||||||||||||    
T  35518014 cttgcctttgtaattaa 35517998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 26490872 - 26490814
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatg 155  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26490872 cttaaacttagagacttatgaaacttatgattttgtacattaatttttgtattttgatg 26490814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 50517617 - 50517714
Alignment:
Q  116 gaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||||||||  |||||||||||||||||||| ||  ||||||||||| | ||||||||||| |||  | ||||| | ||||||||||||    
T  50517617 gaaacttatgattttgtgtgttaatttttgtattttgatgttaagttgagcataatattttattatggtagtttaatgtaattcgcctttgtaattaa 50517714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 4511590 - 4511528
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatg 155  Q
    ||||||||||| ||||||||||| ||||| |||||||| |   ||||||||||||||||||||    
T  4511590 atggcttaaacctagagacttataaaactcatgatttttttagttaatttttgtattttgatg 4511528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 8084661 - 8084711
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  8084661 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 8084711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 29469633 - 29469683
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  29469633 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 29469683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 22480176 - 22480248
Alignment:
Q  141 ttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||||| ||  ||||||||||||| |||||| |||| ||   |||| ||||||||| |||||||    
T  22480176 ttttgtattttgatgataagttgagcataatgttttattacggtagttgtatatactttgtctttataattaa 22480248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 89785 - 89905
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggt 192  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||| | ||||||||||| ||| ||    
T  89785 atggcttaaatttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctaagttgcgcataatattttattatggtagtttcgt 89884  T
Q  193 ataatttgtctttgtaattaa 213  Q
    |||||||||||||||| ||||    
T  89885 ataatttgtctttgtacttaa 89905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 31975350 - 31975234
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||||||||| |||| |||||    
T  31975350 cttagacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttgatataa 31975251  T
Q  197 tttgtctttgtaattaa 213  Q
    |||| ||||||||||||    
T  31975250 tttgcctttgtaattaa 31975234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 31534709 - 31534587
Alignment:
Q  91 gaatggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttg 190  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||    
T  31534709 gaatgacttaaacttagagacatatgaaacttatgattttgtgcgctaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttg 31534610  T
Q  191 gtataatttgtctttgtaattaa 213  Q
    || ||||||| ||| ||||||||    
T  31534609 gtgtaatttgccttagtaattaa 31534587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 16439218 - 16439312
Alignment:
Q  119 acttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    |||| ||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  16439218 acttctgattttgtgcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttggtataatttatctttgtaattaa 16439312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 2607412 - 2607486
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataat 171  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  2607412 cttaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataat 2607486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 24195549 - 24195614
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgcta 158  Q
    ||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  24195549 atggcttaaacctagagatttatgaaacttatgattttgtgcgttaatttttgtattttgatgcta 24195614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 15381196 - 15381129
Alignment:
Q  103 cttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataa 170  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  15381196 cttagagacttaagaaacttatgattttgtgcattaatttttgtattttgatgctgagttgagcataa 15381129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 28900414 - 28900350
Alignment:
Q  119 acttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatgg 183  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||| | |||||||||    
T  28900414 acttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatattttattatgg 28900350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 32567892 - 32567808
Alignment:
Q  129 ttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    |||||||||||||||| ||||||||||||| ||| ||||||| || |||||||| || |||| |||| |||| ||||||||||||    
T  32567892 ttgtgcattaatttttttattttgatgctaaatttagcataacgttttattatgatagtttgatatattttgcctttgtaattaa 32567808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 2607485 - 2607551
Alignment:
Q  147 attttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||  |||||||||||| | |||||||||| |||| |||||||| ||||| |||||||    
T  2607485 attttgatgctaagttgagcataatggaatattatggtagtttgatataatttttctttataattaa 2607551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 38295335 - 38295215
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggt 192  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||  |||| ||  ||||||||||||| ||||||||||| ||||||    
T  38295335 atggcttaaacttaaagacttatgaaacttatgattttgtgcgttaatttttgtattacgatgttaagttgagcataatgttttattatggtagtttggt 38295236  T
Q  193 ataatttgtctttgtaattaa 213  Q
    |||||||||||||||||||||    
T  38295235 ataatttgtctttgtaattaa 38295215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 34342744 - 34342865
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattat-ggtactttgg 191  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||  |||| |||||| | ||||||| |||| ||||     
T  34342744 atggcttaaacttagagacttatgaaatttatgattttgtgtgttaatttttgtattttgatgctaagttgaacataatattttattatgggtagtttgt 34342843  T
Q  192 tataatttgtctttgtaattaa 213  Q
    ||||||||||||||||||||||    
T  34342844 tataatttgtctttgtaattaa 34342865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 2308154 - 2308034
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggt 192  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||  |  ||||||| || ||||||||||| ||||||    
T  2308154 atggcttaaacttagagacttatgaaacttatgattttgtgagttaatttttgtaatttgatgctaagtgtagcataacgttttattatggtagtttggt 2308055  T
Q  193 ataatttgtctttgtaattaa 213  Q
    |||||||  ||||||||||||    
T  2308054 ataatttacctttgtaattaa 2308034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 9731448 - 9731564
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||  | ||||||||||| ||||||||||    
T  9731448 cttaaacttaaagacttacgaaacttatgattttgtgcattaatttttgtattttgatgccaagttgagcataacattttattatggtagtttggtataa 9731547  T
Q  197 tttgtctttgtaattaa 213  Q
    ||||  |||||||||||    
T  9731548 tttgcttttgtaattaa 9731564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 40830137 - 40830252
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||||||||  ||||||||||||| |||||||| || ||||||||||    
T  40830137 cttaaacttagagatttatgaaacttatgattttgtgcgctaatttttgaattttgatgctaagttgagcataatgttttattatgatagtttggtataa 40830236  T
Q  197 tttgtctttgtaattaa 213  Q
    |||| ||||||||||||    
T  40830237 tttg-ctttgtaattaa 40830252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 42242305 - 42242419
Alignment:
Q  99 taaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatt 198  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||  |||||||||| || ||||||||||| ||| ||||||||    
T  42242305 taaacttagagacttatgaaacttatgattttgtgcgttattttttgtattttgatgataagttgagcataaggttttattatggtagtttagtataatt 42242404  T
Q  199 tgtctttgtaattaa 213  Q
    ||| ||| |||||||    
T  42242405 tgtatttctaattaa 42242419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 30850867 - 30850977
Alignment:
Q  103 cttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtc 202  Q
    |||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||  |||||||||| || ||||||||||| |||  |||| ||||||    
T  30850867 cttagagatttacgaaacttatgattttgtgtgttaatttttgtattttgatgctaagttgagcataacgttttattatggtagtttcatatattttgtc 30850966  T
Q  203 tttgtaattaa 213  Q
    |||||||||||    
T  30850967 tttgtaattaa 30850977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 31846763 - 31846647
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||||| || |||  |||||||||| || | ||||||||| |||||||||     
T  31846763 cttaaacgtagagacttatgaaacttatgattttgtgcgttcatttttgtattttaatactaagttgagcataacgtttcattatggtagtttggtatag 31846664  T
Q  197 tttgtctttgtaattaa 213  Q
    |||  |||| |||||||    
T  31846663 tttacctttataattaa 31846647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 18727192 - 18727098
Alignment:
Q  119 acttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    |||||||||||||||| || ||||||||||||||||||||  |||| ||||| || ||||||||||| |||| |||||| || ||||||||||||    
T  18727192 acttatgattttgtgcgttcatttttgtattttgatgctaagttgaacataacgttttattatggtagtttgatataatctgcctttgtaattaa 18727098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 2103814 - 2103886
Alignment:
Q  141 ttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||||||||  |||| |||||||| ||||||||||  |||| |||| ||||||||| |||||||    
T  2103814 ttttgtattttgatgctaagttgaacataatgttttattatggtggtttgatatactttgtctttataattaa 2103886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 18899534 - 18899484
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| ||||||||||||  ||||||||| |||||||||    
T  18899534 ttagagacttatgaaacctatgattttgtgtgttaatttttctattttgat 18899484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 21386084 - 21385968
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||| || ||||||||||| ||||||||||    
T  21386084 cttaaacttagagacttatgaaacttattattttgtgcgttaatttttgtattttgatgctaagttgagcataacgttttattatggtagtttggtataa 21385985  T
Q  197 tttgtctttgtaattaa 213  Q
    |||  ||||||||||||    
T  21385984 ttttcctttgtaattaa 21385968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 49458870 - 49458986
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||| ||||||| |||| |||||    
T  49458870 cttaaacttagagacttatgaaatttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatgttttactatggtagtttgatataa 49458969  T
Q  197 tttgtctttgtaattaa 213  Q
    |||  ||||||||||||    
T  49458970 tttccctttgtaattaa 49458986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 4962308 - 4962190
Alignment:
Q  95 ggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtat 194  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  |||| |||||  | |||||| |||| ||||||||    
T  4962308 ggcttaaacttagagacttgtgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgaacataacattttattacggtagtttggtat 4962209  T
Q  195 aatttgtctttgtaattaa 213  Q
    ||||| |||| ||||||||    
T  4962208 aatttatcttggtaattaa 4962190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 33693766 - 33693889
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcata---atgtattattatggtacttt 189  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||| |||   | || |||||||| || |||    
T  33693766 atggcttaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgttaagttgagtataacgacgttttattatgatagttt 33693865  T
Q  190 ggtataatttgtctttgtaattaa 213  Q
    ||||||||||| ||||||||||||    
T  33693866 ggtataatttgcctttgtaattaa 33693889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 7437132 - 7437038
Alignment:
Q  119 acttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    |||||||||||||||| |||||||||||||||||||||||  || ||||||| || ||||||||||| |||| ||||||||||||||||||||||    
T  7437132 acttatgattttgtgcgttaatttttgtattttgatgctaagttaagcataacgttttattatggtagtttgatataatttgtctttgtaattaa 7437038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 1666391 - 1666497
Alignment:
Q  103 cttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtc 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  || |||||||| | |||| ||| || |||| ||||||||  |    
T  1666391 cttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttaagcataatattttataatgatagtttgttataatttacc 1666490  T
Q  203 tttgtaa 209  Q
    |||||||    
T  1666491 tttgtaa 1666497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 43173417 - 43173501
Alignment:
Q  116 gaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttg 200  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||  |||||||||| || |||| |||||| |||| |||| ||||    
T  43173417 gaaacttatgattttgtgcgttaattttcgtattttgatgttaagttgagcataacgttttatcatggtagtttgttatattttg 43173501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 32766503 - 32766575
Alignment:
Q  141 ttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||||| ||  |||||||||| || |||||||||||  || |||||||||||||||| ||||||    
T  32766503 ttttgtattttgatgttaagttgagcataacgttttattatggtagattagtataatttgtctttgcaattaa 32766575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 49296584 - 49296634
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  49296584 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 49296634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 53836428 - 53836478
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  53836428 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 53836478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 3007405 - 3007300
Alignment:
Q  108 agacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgt 207  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| || |||||||| || |||||||||||||||||||||    
T  3007405 agacttatgaaacttataattttgtgcattaatttttgtattttgatgctaagttgagcataacgttttattatgatagtttggtataatttgtctttgt 3007306  T
Q  208 aattaa 213  Q
    ||||||    
T  3007305 aattaa 3007300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 8029449 - 8029334
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||  ||||||||||||| ||||||||||| ||| | ||||    
T  8029449 cttaaacttagagacttatgaaacttatgattttgtgcgttaatctttgtattttgatgctaagttgagcataatgttttattatggtagttt-gaataa 8029351  T
Q  197 tttgtctttgtaattaa 213  Q
    ||||| |||||||||||    
T  8029350 tttgtttttgtaattaa 8029334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 42423710 - 42423826
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||  |||| |||||||| ||||||||||| ||||||||||    
T  42423710 cttaaacttagagacttatgaaacttatgattttgggcgttaatttttgtattttgatgttaagttgaacataatgttttattatggtagtttggtataa 42423809  T
Q  197 tttgtctttgtaattaa 213  Q
    |||  | ||||||||||    
T  42423810 ttttcccttgtaattaa 42423826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 27974563 - 27974446
Alignment:
Q  97 cttaaacttagagac-ttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtata 195  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| || ||||||||||| |||||| ||    
T  27974563 cttaaacttagagacattatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataacgttttattatggtagtttggtgta 27974464  T
Q  196 atttgtctttgtaattaa 213  Q
    |||||   ||||||||||    
T  27974463 atttgctgttgtaattaa 27974446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 28031832 - 28031715
Alignment:
Q  97 cttaaacttagagac-ttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtata 195  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| || ||||||||||| |||||| ||    
T  28031832 cttaaacttagagacattatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataacgttttattatggtagtttggtgta 28031733  T
Q  196 atttgtctttgtaattaa 213  Q
    |||||   ||||||||||    
T  28031732 atttgctgttgtaattaa 28031715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 44977239 - 44977351
Alignment:
Q  101 aacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||| ||||| |||||  | ||||||| ||| |||||||||||||     
T  44977239 aacttagagacttatgaaacttatgattttgtgcgttaatttttaaattttgatgctaaattgaacataacattttattatagtagtttggtataattta 44977338  T
Q  201 tctttgtaattaa 213  Q
    |||||||||||||    
T  44977339 tctttgtaattaa 44977351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 12737678 - 12737564
Alignment:
Q  98 ttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataat 197  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||  |||||||||| || |||||| ||||  ||||||||||    
T  12737678 ttaaacttagagacttatgaaatttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataacgttttattagggta-gttggtataat 12737580  T
Q  198 ttgtctttgtaattaa 213  Q
     || ||||||||||||    
T  12737579 atgcctttgtaattaa 12737564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 12522001 - 12521900
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||  ||||||||||| | ||||||||||| ||||||||||    
T  12522001 cttaaacttaaagacttatgaaacttatgatttggtgcgttagtttttgtattttgatgctaagttgagcataatattttattatggtagtttggtataa 12521902  T
Q  197 tt 198  Q
    ||    
T  12521901 tt 12521900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 27869533 - 27869417
Alignment:
Q  97 cttaaacttagagactt-atgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtata 195  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||||||  |||||||||| || ||||| ||||| |||||||||    
T  27869533 cttaaacttagagactttatgaaacttatgattttgtgcgttaattttagt-ttttgatgctaagttgagcataacgttttattgtggtaatttggtata 27869435  T
Q  196 atttgtctttgtaattaa 213  Q
    ||||||| ||||||||||    
T  27869434 atttgtcgttgtaattaa 27869417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 6387497 - 6387381
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||  |||||||||| || | ||||| | | |||  |||||    
T  6387497 cttaaacttagagacttatgaaacttataattatgtgcgttaatttttgtattttgatgctaagttgagcataacgtttcattatagaagtttcatataa 6387398  T
Q  197 tttgtctttgtaattaa 213  Q
    |||  ||||||||||||    
T  6387397 ttttcctttgtaattaa 6387381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 18984857 - 18984949
Alignment:
Q  119 acttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaatt 211  Q
    |||||||||||||||   ||||||||||||||||||||||  ||||||| ||||| ||||||||||| |||||||||||||  ||||||||||    
T  18984857 acttatgattttgtgtgctaatttttgtattttgatgctaagttgagcaaaatgttttattatggtagtttggtataattttcctttgtaatt 18984949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 41394379 - 41394471
Alignment:
Q  108 agacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttg 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  || | || ||  | ||||||||||| ||||||||||||||    
T  41394379 agacttatgaaacttatgattttgtgcattaatttttgtaatttgatgctaagttaaacacaacattttattatggtagtttggtataatttg 41394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 24082716 - 24082810
Alignment:
Q  119 acttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||||||| || | |||||||||| |||||||||| ||||| ||||| || |||||||| || |||||||||||||  ||||||||||||    
T  24082716 acttatgattttgcgcgtaaatttttgtactttgatgctaaattgaacataacgttttattatgatagtttggtataattttcctttgtaattaa 24082810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 27878207 - 27878149
Alignment:
Q  97 cttaaacttagagactt-atgaaacttatgattttgtgcattaatttttgtattttgatg 155  Q
    ||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||    
T  27878207 cttaaacttagagactttatgaaacttatgattttgtgcgtt-atttttgtattttgatg 27878149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 28018388 - 28018330
Alignment:
Q  97 cttaaacttagagactt-atgaaacttatgattttgtgcattaatttttgtattttgatg 155  Q
    ||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||    
T  28018388 cttaaacttagagactttatgaaacttatgattttgtgcgtt-atttttgtattttgatg 28018330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 27915151 - 27915093
Alignment:
Q  97 cttaaacttagagactt-atgaaacttatgattttgtgcattaatttttgtattttgatg 155  Q
    ||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||||||    
T  27915151 cttaaacttagagactttaggaaacttatgattttgtgcgt-aatttttgtattttgatg 27915093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 27961570 - 27961512
Alignment:
Q  97 cttaaacttagagactt-atgaaacttatgattttgtgcattaatttttgtattttgatg 155  Q
    ||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||||||    
T  27961570 cttaaacttagagactttaggaaacttatgattttgtgcgt-aatttttgtattttgatg 27961512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 27876625 - 27876573
Alignment:
Q  161 ttgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    |||||||||| ||||||||| |||| ||||||||||||||  |||||||||||    
T  27876625 ttgagcataacgtattattacggtagtttggtataatttgcttttgtaattaa 27876573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 28016806 - 28016754
Alignment:
Q  161 ttgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    |||||||||| ||||||||| |||| ||||||||||||||  |||||||||||    
T  28016806 ttgagcataacgtattattacggtagtttggtataatttgcttttgtaattaa 28016754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 19484683 - 19484733
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  19484683 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 19484733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 49452656 - 49452540
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||  ||||||||||| | |||||| |||| |||| |||||    
T  49452656 cttaaacttagagacttatgaaacttatgatttggtgcgttaatttttgtattttgatgctaagttgagcataatattttattacggtagtttgatataa 49452557  T
Q  197 tttgtctttgtaattaa 213  Q
    ||| |||||||||||||    
T  49452556 tttatctttgtaattaa 49452540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 32759665 - 32759560
Alignment:
Q  108 agacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgt 207  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||  || ||||||| || ||||||||||| |||||||||||||| ||||||    
T  32759665 agacttatgaaacatatgattttgtgcgttaatttttgtattttgatgctaagtttagcataacgttttattatggtagtttggtataatttgcctttgt 32759566  T
Q  208 aattaa 213  Q
    ||||||    
T  32759565 aattaa 32759560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 3593741 - 3593857
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| || ||  |||| ||| |||| ||||||||||| ||||||||||    
T  3593741 cttaaacttagagacttaagaaacttatgattgtgtgcactaatttttgtattttggtgttaagttgaacattatgttttattatggtagtttggtataa 3593840  T
Q  197 tttgtctttgtaattaa 213  Q
    |||| ||||||||||||    
T  3593841 tttgcctttgtaattaa 3593857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 47371165 - 47371049
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||||||| | |||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  47371165 cttaaacttatagacttatgaaacttataattttgtgcgttaatttttatgttttgatgctaagttgagcataatgttttattatggtagtttggtataa 47371066  T
Q  197 tttgtctttgtaattaa 213  Q
    |||| | || |||||||    
T  47371065 tttgccgttttaattaa 47371049  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 49236597 - 49236477
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggt 192  Q
    ||||||||||||||| |||||||||||||||||||||||  | |||||||||||||||||||||||  | |||||||| || ||||||||||| ||| ||    
T  49236597 atggcttaaacttagggacttatgaaacttatgattttggacgttaatttttgtattttgatgctaagtagagcataacgttttattatggtagtttagt 49236498  T
Q  193 ataatttgtctttgtaattaa 213  Q
    ||||||| ||||||| |||||    
T  49236497 ataatttttctttgttattaa 49236477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 48966109 - 48965996
Alignment:
Q  93 atggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggt 192  Q
    |||||||||||||| ||||||||||||||||||||||| |       |||||||||||||||||||  |||| |||||||| ||||||||||| ||| ||    
T  48966109 atggcttaaacttaaagacttatgaaacttatgattttat-------tttttgtattttgatgctaagttgaacataatgttttattatggtagtttagt 48966017  T
Q  193 ataatttgtctttgtaattaa 213  Q
    |||||||| ||||||||||||    
T  48966016 ataatttgcctttgtaattaa 48965996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 28403574 - 28403501
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataa 170  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  28403574 cttaaacttagagacttatgaaaattatgattttgtgcgttaatttttgtattttgatgctaagttgagcataa 28403501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 35176858 - 35176755
Alignment:
Q  110 acttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaa 209  Q
    ||||| || |||||||||||||||| | |||||||||||||||||||||  ||||||||||  | ||||||||||| |||| ||||||||| ||||||||    
T  35176858 acttaagagacttatgattttgtgcgtgaatttttgtattttgatgctaagttgagcataacattttattatggtagtttgctataatttgcctttgtaa 35176759  T
Q  210 ttaa 213  Q
    ||||    
T  35176758 ttaa 35176755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 2292863 - 2292753
Alignment:
Q  103 cttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtc 202  Q
    |||||||||| | ||||||| ||||||||||| |||||||||||||||||| ||||  |||| ||||| || ||||||||||| ||||||||| ||||      
T  2292863 cttagagactcaagaaacttgtgattttgtgcgttaatttttgtattttgacgctaagttgaacataacgttttattatggtagtttggtatagtttgca 2292764  T
Q  203 tttgtaattaa 213  Q
    |||||||||||    
T  2292763 tttgtaattaa 2292753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 8122461 - 8122565
Alignment:
Q  102 acttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgt 201  Q
    |||||||||||| ||||||||||||||| |||  |||||||||||||||||||||||  |||||||||| || |||| || ||| ||||||||||||||     
T  8122461 acttagagacttgtgaaacttatgattt-gtg--ttaatttttgtattttgatgctaagttgagcataacgttttataatagtagtttggtataatttgc 8122557  T
Q  202 ctttgtaa 209  Q
    ||||||||    
T  8122558 ctttgtaa 8122565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 25254028 - 25254108
Alignment:
Q  90 tgaatggcttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataa 170  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||  ||||||||||    
T  25254028 tgaatgacttgaacttagagacttatgaaacttatgattttgtgcgctaatttttgttttttgatgctaagttgagcataa 25254108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 15927574 - 15927676
Alignment:
Q  110 acttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaa 209  Q
    |||||||||| |||||||||| ||| ||||||||| ||||||||||||| |||||| || |  | ||||||| ||| |||||||||||||||||||||||    
T  15927574 acttatgaaatttatgattttttgcgttaatttttatattttgatgctaaattgagaat-acattttattatagtagtttggtataatttgtctttgtaa 15927672  T
Q  210 ttaa 213  Q
    ||||    
T  15927673 ttaa 15927676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 19863426 - 19863511
Alignment:
Q  127 ttttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaatta 212  Q
    ||||||||||||||||||||||||||||| ||  ||||||||||  | ||||||||||| |||  |||||||||||||||||||||    
T  19863426 ttttgtgcattaatttttgtattttgatgttaagttgagcataacattttattatggtagtttaatataatttgtctttgtaatta 19863511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 19863362 - 19863420
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatg 155  Q
    ||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||    
T  19863362 cttaaacttagggatttatgaaacttatgatttcgtgcattaatttttgtattttgatg 19863420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 42303963 - 42303897
Alignment:
Q  119 acttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggta 185  Q
    |||||||||||||||| |||||||||||||||||| ||||  ||||||||||  | |||||||||||    
T  42303963 acttatgattttgtgcgttaatttttgtattttgaagctaagttgagcataacattttattatggta 42303897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 28403481 - 28403430
Alignment:
Q  162 tgagcataatgtattattatggtactttggtataatttgtctttgtaattaa 213  Q
    ||||||||| || ||||||||||| ||||||||||||| |||||||||||||    
T  28403481 tgagcataaagttttattatggtagtttggtataatttttctttgtaattaa 28403430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 1242912 - 1242862
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  1242912 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 1242862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 8147832 - 8147882
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  8147832 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 8147882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 11578731 - 11578681
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  11578731 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 11578681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 26758106 - 26758156
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  26758106 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 26758156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 41353911 - 41353961
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  41353911 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 41353961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 5208899 - 5208854
Alignment:
Q  109 gacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||||||  ||||||||| |||||||||    
T  5208899 gacttatgaaacttatgcttttgtgtgttaatttttctattttgat 5208854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 29716497 - 29716383
Alignment:
Q  97 cttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataa 196  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||  ||||||||||  | ||||||||||| ||||||||||    
T  29716497 cttaaacttagagacttatgaaacttatgattttgtg--ttaatttttatattttgatgctaagttgagcataacattttattatggtagtttggtataa 29716400  T
Q  197 tttgtctttgtaattaa 213  Q
    |||| ||||||||||||    
T  29716399 tttgcctttgtaattaa 29716383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 15286111 - 15286001
Alignment:
Q  103 cttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgt- 201  Q
    |||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||  |||||||||| || |||||||||||  |||||||||||| |     
T  15286111 cttagagaattaagaaacttaagattttgtgccttaatttttgtattttgatgctaagttgagcataacgt-ttattatggtagcttggtataatttttc 15286013  T
Q  202 ctttgtaattaa 213  Q
    ||||||||||||    
T  15286012 ctttgtaattaa 15286001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 5650407 - 5650357
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    |||||||||||||||||||||| |||||||  ||||||||| |||||||||    
T  5650407 ttagagacttatgaaacttatgcttttgtgagttaatttttctattttgat 5650357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 37797749 - 37797699
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    |||||||||||||||||||||| |||||||  ||||||||| |||||||||    
T  37797749 ttagagacttatgaaacttatgcttttgtgtgttaatttttctattttgat 37797699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 28622799 - 28622749
Alignment:
Q  104 ttagagacttatgaaacttatgattttgtgcattaatttttgtattttgat 154  Q
    ||||||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  28622799 ttagagacttatgaaacctatgcttttgtgtgttaatttttctattttgat 28622749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 35701748 - 35701843
Alignment:
Q  116 gaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatggtactttggtataatttgtctttgtaatta 212  Q
    ||||||||||||||||||  |||| ||||||||||  ||||||  |||||||||| | |||||| ||||  || |||||| |||| |||| ||||||    
T  35701748 gaaacttatgattttgtgagttaa-ttttgtatttaaatgctaagttgagcataacgcattattttggtgattgggtatactttgcctttttaatta 35701843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 9380 - 9444
Alignment:
Q  119 acttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgtattattatgg 183  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||| | |||||||||    
T  9380 acttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatattttattatgg 9444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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