View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_high_3 (Length: 735)
Name: NF14723_high_3
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 14 - 716
Target Start/End: Complemental strand, 48890434 - 48889732
Alignment:
| Q |
14 |
ttattctgaaattaaatcccaaacacgaacgcaactatcttctcccgaactgaccactctttctggctcaataaaagtcaagccatacactccacctaaa |
113 |
Q |
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| T |
48890434 |
ttattctgaaattaaatcccaaacacgaacgcaactatcttctcccgaactgaccactctttctggctcaataaaagtcaagccatacactccacctaaa |
48890335 |
T |
|
| Q |
114 |
tgagccccttttatggttctgcggcttgatgctggctttccaatttcgtatacaataacacatgtatcaagtgaaccagtagctaccagtttgctattag |
213 |
Q |
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| T |
48890334 |
tgagccccttttatggttctgcggcttgatgctggctttccaatttcgtatacaataacacatgtatcaagtgaaccagtagctaccagtttgctattag |
48890235 |
T |
|
| Q |
214 |
gtgaccaagcaagacagtttacacgtgcagtgtgaaacaacatgttattaagcaccacctgaaagagaaaggaagatttatttagcaacggcatttttca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48890234 |
gtgaccaagcaagacagtttacacgtgcagtgtgaaacaacatgttattaagcaccacctgaaagagaaaggaagatttatttagcaacgacatttttca |
48890135 |
T |
|
| Q |
314 |
gtaagttatgacaaaaacaagtgtacatcatgataattgaagcaataatgttacaatcatgagagtataagtcatgtatttctcatttcacataggaaaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48890134 |
gtaagttatgacaaaaacaagtgtacatcatgataattgaagcaataatgttacaatcatgagagtataagtcatgtatttctcatttcacataggaaaa |
48890035 |
T |
|
| Q |
414 |
tttggtatatataagacaaacaaagcattcaggcacaagacatttcaacttcatggaacagtcatatcaggctcaagttacctctctggaagcacagtcc |
513 |
Q |
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| T |
48890034 |
tttggtatatataggacaaacaaagcattcaggcacaagacatatcaacttcatggaacagtcatatcaggctcaagttacctctctggaagcacagtcc |
48889935 |
T |
|
| Q |
514 |
cacacaacagcttcacgattaagatcagctgatgcaaacatggaaacatccggagaatatttgattacactgattgctcctcggtgcttctcaagaacaa |
613 |
Q |
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| T |
48889934 |
cacacaacagcttcacgatttagatcagctgatgcaaacatggaaacatctggagaatatttgattacactgattgctcctcggtgcttctcaagaacaa |
48889835 |
T |
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| Q |
614 |
tctgttctgtaagtgtatctcctgagatagaataaatatgcagcttaccatcttgcccacctacaattgcttcactgccatcaggtgaaatagtagacgc |
713 |
Q |
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| T |
48889834 |
tttgttctgtaagtgtatctcctgagatagaataaatatgcagcttaccatcttgcccacctacaattgcttcactgccatcaggtgaaatagtagacgc |
48889735 |
T |
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| Q |
714 |
tgt |
716 |
Q |
| |
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||| |
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| T |
48889734 |
tgt |
48889732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 572
Target Start/End: Original strand, 45095012 - 45095088
Alignment:
| Q |
496 |
tctctggaagcacagtcccacacaacagcttcacgattaagatcagctgatgcaaacatggaaacatccggagaata |
572 |
Q |
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|||| ||| |||| |||||| ||||||||||| ||||||| ||| ||||||||||||| |||| ||| |||||||| |
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| T |
45095012 |
tctcgggaggcacggtcccaaacaacagcttctcgattaacatcccctgatgcaaacattgaaaaatctggagaata |
45095088 |
T |
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