View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14723_high_4 (Length: 622)

Name: NF14723_high_4
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14723_high_4
NF14723_high_4
[»] chr5 (7 HSPs)
chr5 (19-620)||(30261021-30261621)
chr5 (198-260)||(4593569-4593631)
chr5 (198-260)||(40611858-40611920)
chr5 (229-260)||(545245-545276)
chr5 (229-260)||(2465573-2465604)
chr5 (229-260)||(25591028-25591059)
chr5 (229-257)||(8075329-8075357)
[»] chr8 (2 HSPs)
chr8 (198-260)||(35178269-35178330)
chr8 (229-257)||(1952191-1952219)
[»] chr7 (4 HSPs)
chr7 (198-260)||(7258872-7258933)
chr7 (229-260)||(44333734-44333765)
chr7 (229-260)||(48788170-48788201)
chr7 (229-257)||(42477981-42478009)
[»] chr3 (2 HSPs)
chr3 (229-260)||(36279811-36279842)
chr3 (229-260)||(48809173-48809204)
[»] chr2 (5 HSPs)
chr2 (229-260)||(24458949-24458980)
chr2 (229-260)||(31091021-31091052)
chr2 (229-260)||(39999829-39999860)
chr2 (230-260)||(2910983-2911013)
chr2 (229-257)||(32765775-32765803)
[»] chr1 (2 HSPs)
chr1 (198-259)||(32665033-32665093)
chr1 (230-260)||(9340535-9340565)


Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 19 - 620
Target Start/End: Complemental strand, 30261621 - 30261021
Alignment:
Q  19 attccggagatggaaatcttgtcaaaagtttctgacacatgacagttccttgaaagtctaggaaagaatagtccagaaattgtgacctttcaaaattcgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30261621 attccggagatggaaatcttgtcaaaagtttctgacacatgacagttccttgaaagtctaggaaagaatagtccagaaattgtgacctttcaaaattcgt 30261522  T
Q  119 catctgctcaaaaccaaaagaattcgtccatgtgtctagcacaccgggaacagcaggcaagactagtctttccactccaagttgctttagcttctgatga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30261521 catctgctcaaaaccaaaagaattcgtccatgtgtctagcacaccgggaacagcaggcaagactagtctttccactccaagttgctttagcttctgatga 30261422  T
Q  219 aagnnnnnnnttaaagtgagaaatttgataataaacttggaataacttacacaatagaaatgaattacaattcaaatgtcacaggccatatcaagatgat 318  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30261421 aagaaaaaaattaaagtgagaaatttgataataaacttggaataacttacacaatagaaatgaattacaattcaaatgtcacaggccatatcaagatgat 30261322  T
Q  319 ttaatatagttcacaaaaacaaccagataaaatgacaaactttatgatttttatgtcaccttttcgagctcatccattaaaacacggcacattccaagtc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30261321 ttaatatagttcacaaaaacaaccagataaaatgacaaactttatgatttttatgtcaccttttcgagctcatccattaaaacgcggcacattccaagtc 30261222  T
Q  419 gtctgtactgaaatctggtacctacgaggggcacttctgctatcttctgtccaaatatcctaaaacatgaaatgccaagttatggaaacttgaaatgcaa 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30261221 gtctgtactgaaatctggtacctacgaggggcacttctgctatcttctctccaaatatcctaaaacatgaaatgccaagttacggaaacttgaaatgcaa 30261122  T
Q  519 tcactgaatcatgcataatctgttattgtatttgattcttagtagtagcagatcctatactcacctcacagtcgccacactaatcaattcttcatctctc 618  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30261121 tcactgaatcatgcataatctgttattgtattt-attcttagtagtagcagatcctatactcacctcacagtcgccacactaatcaattcttcatttctc 30261023  T
Q  619 tc 620  Q
    ||    
T  30261022 tc 30261021  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 4593569 - 4593631
Alignment:
Q  198 agttgctttagcttctgatgaaagnnnnnnnttaaagtgagaaatttgataataaacttggaa 260  Q
    |||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||    
T  4593569 agttgctttagcttctcatgaaagaaaaaaattaaagtgagaaatttgataataaacttggaa 4593631  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 40611920 - 40611858
Alignment:
Q  198 agttgctttagcttctgatgaaagnnnnnnnttaaagtgagaaatttgataataaacttggaa 260  Q
    |||||||||| ||||| |||||||       ||||||||||||||||||||||||||||||||    
T  40611920 agttgctttaacttctcatgaaagaaaaaaattaaagtgagaaatttgataataaacttggaa 40611858  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Complemental strand, 545276 - 545245
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  545276 ttaaagtgagaaatttgataataaacttggaa 545245  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 2465573 - 2465604
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  2465573 ttaaagtgagaaatttgataataaacttggaa 2465604  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Complemental strand, 25591059 - 25591028
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  25591059 ttaaagtgagaaatttgataataaacttggaa 25591028  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 8075329 - 8075357
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttg 257  Q
    |||||||||||||||||||||||||||||    
T  8075329 ttaaagtgagaaatttgataataaacttg 8075357  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 35178269 - 35178330
Alignment:
Q  198 agttgctttagcttctgatgaaagnnnnnnnttaaagtgagaaatttgataataaacttggaa 260  Q
    |||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||    
T  35178269 agttgctttagcttctcatgaaagaaaaaa-ttaaagtgagaaatttgataataaacttggaa 35178330  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 1952219 - 1952191
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttg 257  Q
    |||||||||||||||||||||||||||||    
T  1952219 ttaaagtgagaaatttgataataaacttg 1952191  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 7258933 - 7258872
Alignment:
Q  198 agttgctttagcttctgatgaaagnnnnnnnttaaagtgagaaatttgataataaacttggaa 260  Q
    |||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||    
T  7258933 agttgctttagcttctcatgaaagaataaa-ttaaagtgagaaatttgataataaacttggaa 7258872  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Complemental strand, 44333765 - 44333734
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  44333765 ttaaagtgagaaatttgataataaacttggaa 44333734  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 48788170 - 48788201
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  48788170 ttaaagtgagaaatttgataataaacttggaa 48788201  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 42478009 - 42477981
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttg 257  Q
    |||||||||||||||||||||||||||||    
T  42478009 ttaaagtgagaaatttgataataaacttg 42477981  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 36279811 - 36279842
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  36279811 ttaaagtgagaaatttgataataaacttggaa 36279842  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 48809173 - 48809204
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  48809173 ttaaagtgagaaatttgataataaacttggaa 48809204  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 24458949 - 24458980
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  24458949 ttaaagtgagaaatttgataataaacttggaa 24458980  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 31091021 - 31091052
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  31091021 ttaaagtgagaaatttgataataaacttggaa 31091052  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 260
Target Start/End: Original strand, 39999829 - 39999860
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttggaa 260  Q
    ||||||||||||||||||||||||||||||||    
T  39999829 ttaaagtgagaaatttgataataaacttggaa 39999860  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 2910983 - 2911013
Alignment:
Q  230 taaagtgagaaatttgataataaacttggaa 260  Q
    |||||||||||||||||||||||||||||||    
T  2910983 taaagtgagaaatttgataataaacttggaa 2911013  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 32765775 - 32765803
Alignment:
Q  229 ttaaagtgagaaatttgataataaacttg 257  Q
    |||||||||||||||||||||||||||||    
T  32765775 ttaaagtgagaaatttgataataaacttg 32765803  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 32665093 - 32665033
Alignment:
Q  198 agttgctttagcttctgatgaaagnnnnnnnttaaagtgagaaatttgataataaacttgga 259  Q
    |||||||||||||||| |||||||       |||||||||||||||||||||||||||||||    
T  32665093 agttgctttagcttctcatgaaagaaaaaa-ttaaagtgagaaatttgataataaacttgga 32665033  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 9340535 - 9340565
Alignment:
Q  230 taaagtgagaaatttgataataaacttggaa 260  Q
    |||||||||||||||||||||||||||||||    
T  9340535 taaagtgagaaatttgataataaacttggaa 9340565  T

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