View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_10 (Length: 470)
Name: NF14723_low_10
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 34 - 450
Target Start/End: Complemental strand, 7423040 - 7422624
Alignment:
| Q |
34 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
133 |
Q |
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| T |
7423040 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
7422941 |
T |
|
| Q |
134 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| |
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| T |
7422940 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaatgatatgaagaaagaggatttgaatatggaggagatttt |
7422841 |
T |
|
| Q |
234 |
tgggctcaccacacctaggaaaataccactagaagttgttcttgagcctagacttcctcatcatctttactccctctaagaatttttctttaataagatt |
333 |
Q |
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| T |
7422840 |
tgggctgactactcctaggaaaataccactagaagttgttgtggagcctagacttcctcatcatctttactccctctaagaatttttctttaataagatt |
7422741 |
T |
|
| Q |
334 |
gggaataatgggatttgtgtgagttcaatgtcattaacttaatgacaagnnnnnnnncaagcatgactatgaataaaaaatattggttttcgaatgttga |
433 |
Q |
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| T |
7422740 |
gggaataatgggatttgtgtgagttcaatgtcattaacttaatgacaagaaaaaaaacaagcatgactgtgaataaaaaatattggtgtttgaatgttga |
7422641 |
T |
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| Q |
434 |
agttagtaacgagtccc |
450 |
Q |
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| T |
7422640 |
agttagtaatgagtccc |
7422624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 62 - 382
Target Start/End: Complemental strand, 7429418 - 7429098
Alignment:
| Q |
62 |
taaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgatacaatcaagtttggctaa |
161 |
Q |
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||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
7429418 |
taaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggctaa |
7429319 |
T |
|
| Q |
162 |
tttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttttgggctcaccacacctaggaaaatacca |
261 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
7429318 |
cttgttgcatggatttaattggagattacctaatgatatgaaaaaagaggatttaaatatggaggagatttttgggctcactacacctaagaaaatacca |
7429219 |
T |
|
| Q |
262 |
ctagaagttgttcttgagcctagacttcctcatcatctttactccctctaagaatttttctttaataagattgggaataatgggatttgtgtgagttcaa |
361 |
Q |
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| T |
7429218 |
ttagaagttgttttggagcctaaacttccgtatcatctttattgcctctaagtatttttctctaataatattgggaataatgggatttttgtgagttcaa |
7429119 |
T |
|
| Q |
362 |
tgtcattaacttaatgacaag |
382 |
Q |
| |
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||| |||||||| |||||||| |
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| T |
7429118 |
tgttattaacttcatgacaag |
7429098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 308
Target Start/End: Complemental strand, 7415381 - 7415107
Alignment:
| Q |
34 |
gagaggtttattggtaataatatagatgtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtc |
133 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
7415381 |
gagaggtttcttggtaaagatatagatgtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggatgtgtcctggttaccctcttggta |
7415282 |
T |
|
| Q |
134 |
ttaaggtgatacaatcaagtttggctaatttgttgcatggatttaattggagattacctaataatgtgaaaaaagaggatttgaatatggaggagatttt |
233 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7415281 |
ttaaggtgattcaaacaagtttggctaatttgttgcatggatttaattggacattacctaataatgtgaaaaaggaggatttgaatatggaggagatttt |
7415182 |
T |
|
| Q |
234 |
tgggctcaccacacctaggaaaataccactagaagttgttcttgagcctagacttcctcatcatctttactccct |
308 |
Q |
| |
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|||||| | ||||||| |||||||||| ||||| ||||| | |||||||||||| || |||||||||||||||| |
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| T |
7415181 |
tgggctttctacacctaagaaaataccattagaaattgttgtggagcctagacttgctgatcatctttactccct |
7415107 |
T |
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