View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_16 (Length: 376)
Name: NF14723_low_16
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 43639885 - 43640245
Alignment:
| Q |
1 |
cttaaggtaaaatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttcttctagaagtttgaatgttccaaggtggtctcta |
100 |
Q |
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| T |
43639885 |
cttaaggtaaaatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttcttctagaagtttgaatgttccaaggtggtctcta |
43639984 |
T |
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| Q |
101 |
acaaccttaatcgcttcgttcattaatatataaggatcgaagtttgcatgaatgtataaacatgttttgaaagttgattcaacaacacgtgtggatccac |
200 |
Q |
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| T |
43639985 |
acaaccttaatcgcttcgttcattaatatataaggatcgaagtttgcatgaatgtataaacatgttttgaaagttgattcaacaacacgtgtggatccac |
43640084 |
T |
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| Q |
201 |
tttccatgcaaatgtccacgttgttattgttttctcctggttgaagacaagctctgaaagaaccttcgatgagtggtaaaagaagaacgtagggacgttg |
300 |
Q |
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| T |
43640085 |
tttccatgcaaatgtccacgttgttattgttttctcctggttgaagacaagctctgaaagaaccttcgatgagtggtaaaagaagaacgtagggacgttg |
43640184 |
T |
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| Q |
301 |
tttaacggtgtcgttttcaagtataatcatttgagtttcgttttctatgtcattgcctttg |
361 |
Q |
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| T |
43640185 |
tttaacggtgtcgttttcaagtataatcatttgagtttcgttttctatgtcattgcctttg |
43640245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 486486 - 486412
Alignment:
| Q |
1 |
cttaaggtaaaatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttcttctagaag |
75 |
Q |
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| T |
486486 |
cttaagataaaatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttcttctagaag |
486412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 36432407 - 36432444
Alignment:
| Q |
8 |
taaaatgcatcccatgtacaccatccaaatttatcaac |
45 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |
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| T |
36432407 |
taaaaagcatcccatgtacaccaaccaaatttatcaac |
36432444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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