View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14723_low_17 (Length: 375)

Name: NF14723_low_17
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14723_low_17
NF14723_low_17
[»] chr1 (3 HSPs)
chr1 (13-360)||(28026940-28027287)
chr1 (226-356)||(12478544-12478674)
chr1 (214-315)||(34372430-34372531)
[»] chr5 (6 HSPs)
chr5 (214-356)||(6522080-6522222)
chr5 (208-286)||(38779440-38779518)
chr5 (214-287)||(38771611-38771684)
chr5 (215-251)||(13992461-13992497)
chr5 (274-347)||(30901816-30901889)
chr5 (226-283)||(33457954-33458011)
[»] chr7 (3 HSPs)
chr7 (295-360)||(26737700-26737765)
chr7 (229-285)||(24547035-24547091)
chr7 (298-351)||(18030655-18030708)
[»] chr6 (2 HSPs)
chr6 (216-314)||(9681006-9681104)
chr6 (201-286)||(24708915-24709000)
[»] chr8 (2 HSPs)
chr8 (208-356)||(11319341-11319488)
chr8 (201-266)||(43304369-43304434)
[»] chr4 (2 HSPs)
chr4 (207-251)||(29262565-29262609)
chr4 (213-249)||(23033519-23033555)
[»] scaffold0187 (1 HSPs)
scaffold0187 (205-267)||(1785-1847)
[»] chr2 (1 HSPs)
chr2 (134-174)||(38270137-38270177)


Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 28027287 - 28026940
Alignment:
Q  13 agcagagaaaaattgattcaagcaaatttacgcttggtacactacattgctaaaagttaccaagggcgtggtctcagcatcgaggacttattacaggtag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28027287 agcagagaaaaattgattcaagcaaatttacgcttggtacactacattgctaaaagttaccaagggcgtggtctcagcattgaggacttattacaggtag 28027188  T
Q  113 tttagacgcttcatctgttgggtatggctcatagtttactgaaaattgggcaggttgctcgagcgaggttagagccccctgcgctatggttcaagggtaa 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28027187 tttagacgcttcatctgttgggtatggctcatagtttaccgaaaattgggcaggttgctcgagcgaggttagagccccctgcgctatggttcaagggtaa 28027088  T
Q  213 ccttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtaccacagtcgctctgcagtcaaagacg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28027087 ccttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtaccacagtcgctctgcagtcaaagacg 28026988  T
Q  313 tagccacaattggccgaactccacgatcaaatatcgtgtgttctctat 360  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28026987 tagccacaattggccgaactccacgatcaaatatcttgtgttctctat 28026940  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 12478674 - 12478544
Alignment:
Q  226 accgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtaccacagtcgctctgcagtcaaagacgtagccacaattgg 325  Q
    ||||||||||||||| ||||||||||||| |||| | |||| ||| ||| |||||| || ||  ||| |||||||||||   |||||||| |||||||||    
T  12478674 accgtagtatttaaatacaagttgtactctataagctctaagcttgatttataaaatggcactgcagccgctctgcagtaggagacgtaggcacaattgg 12478575  T
Q  326 ccgaactccacgatcaaatatcgtgtgttct 356  Q
    || ||| ||  ||||||||||||||| ||||    
T  12478574 ccaaacaccgtgatcaaatatcgtgtcttct 12478544  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 34372531 - 34372430
Alignment:
Q  214 cttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtaccacagtcgctctgcagtcaaagacgt 313  Q
    ||||||||||| | ||||||||||||| ||||||||||||   |||||||||| ||| | ||||| || ||||| ||||||| | |||||||| ||| ||    
T  34372531 cttgtaaactggatcgtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaagggtactacagtcgttgtgcagtcagagatgt 34372432  T
Q  314 ag 315  Q
    ||    
T  34372431 ag 34372430  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 214 - 356
Target Start/End: Complemental strand, 6522222 - 6522080
Alignment:
Q  214 cttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtaccacagtcgctctgcagtcaaagacgt 313  Q
    ||||||||||  |||||||||||||||||||||||||| |   |||| |||||  || | ||||| |||||||| ||||  |||||||||||  ||||||    
T  6522222 cttgtaaactagaccgtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaaggtactacagctgctctgcagtctgagacgt 6522123  T
Q  314 agccacaattggccgaactccacgatcaaatatcgtgtgttct 356  Q
    || |||||||||| |||| ||| |||||||| ||| |||||||    
T  6522122 aggcacaattggctgaaccccatgatcaaatctcgagtgttct 6522080  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 38779440 - 38779518
Alignment:
Q  208 ggtaaccttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggta 286  Q
    ||||| ||||||||||| || |||||||||||||||||||||||||    ||||||||| ||| | ||||| |||||||    
T  38779440 ggtaatcttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaaggta 38779518  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 38771611 - 38771684
Alignment:
Q  214 cttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtac 287  Q
    ||||||||||| || |||||||||||||||| ||||||||   |||||| ||| ||||||||| | ||||||||    
T  38771611 cttgtaaactgcactgtagtatttaaacacatgttgtactttttaaaccgtaagcttaattaacagaaaggtac 38771684  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 13992497 - 13992461
Alignment:
Q  215 ttgtaaactgaaccgtagtatttaaacacaagttgta 251  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13992497 ttgtaaactgaacggtagtatttaaacacaagttgta 13992461  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 30901816 - 30901889
Alignment:
Q  274 taataaaaaggtaccacagtcgctctgcagtcaaagacgtagccacaattggccgaactccacgatcaaatatc 347  Q
    ||||| |||| ||| |||||||||||| ||||  |||||||| |||||||| ||||||||   |||||||||||    
T  30901816 taatagaaagatactacagtcgctctgtagtcggagacgtagacacaattgaccgaactctgtgatcaaatatc 30901889  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 33457954 - 33458011
Alignment:
Q  226 accgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaag 283  Q
    ||||||||||||||||||||| ||||||| |||| || ||| ||| ||||||| ||||    
T  33457954 accgtagtatttaaacacaagctgtactctataagccataaacttgattaatagaaag 33458011  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 26737700 - 26737765
Alignment:
Q  295 gctctgcagtcaaagacgtagccacaattggccgaactccacgatcaaatatcgtgtgttctctat 360  Q
    ||||| ||||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||||    
T  26737700 gctctacagtcaaagacgtcgacacaattggccgaactccgtgatcaaatatcgtgtgttctctat 26737765  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 24547091 - 24547035
Alignment:
Q  229 gtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggt 285  Q
    |||||||||||||||||||||||||  ||||||||||| ||| ||||||| ||||||    
T  24547091 gtagtatttaaacacaagttgtactttataaaccctaagcttgattaatagaaaggt 24547035  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 18030655 - 18030708
Alignment:
Q  298 ctgcagtcaaagacgtagccacaattggccgaactccacgatcaaatatcgtgt 351  Q
    ||||||||| |||||||  ||||||||||||||||||| |||||||||| ||||    
T  18030655 ctgcagtcagagacgtaagcacaattggccgaactccatgatcaaatattgtgt 18030708  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 9681006 - 9681104
Alignment:
Q  216 tgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtaccacagtcgctctgcagtcaaagacgta 314  Q
    ||||||||| |||||| |||||||| |||||||||| || |||||||||||  ||| |||||| |||||||   |||| |||||||||||| |||||||    
T  9681006 tgtaaactggaccgtaatatttaaatacaagttgtaatctataaaccctaagtttagttaatagaaaggtaatgcagttgctctgcagtcagagacgta 9681104  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 24708915 - 24709000
Alignment:
Q  201 gttcaagggtaaccttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggta 286  Q
    |||||||||||| |||||||||  |||| |||||||| || |||||||||| || ||||||||||| ||| |||| || |||||||    
T  24708915 gttcaagggtaatcttgtaaaccaaaccttagtatttgaatacaagttgtattctataaaccctaagcttgattattagaaaggta 24709000  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 356
Target Start/End: Original strand, 11319341 - 11319488
Alignment:
Q  208 ggtaaccttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaatcttaattaataaaaaggtaccacagtcgctctgcagtcaa 307  Q
    |||||||||||||| |||||||| |||||||| ||||||||||| ||  ||||| |||| ||| | ||||| |||||||| || | ||| ||| |||       
T  11319341 ggtaaccttgtaaa-tgaaccgtcgtatttaagcacaagttgtaatctgtaaactctaagcttgaataatagaaaggtactaccgccgccctgtagttgg 11319439  T
Q  308 agacgtagccacaattggccgaactccacgatcaaatatcgtgtgttct 356  Q
    || ||||| ||||||| || |||||||  |||||||| |||||||||||    
T  11319440 aggcgtaggcacaattagctgaactccgtgatcaaatctcgtgtgttct 11319488  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 43304434 - 43304369
Alignment:
Q  201 gttcaagggtaaccttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaa 266  Q
    ||||| |||||| ||||||||||| |   || |||||||||||||||||||||  |||||||||||    
T  43304434 gttcacgggtaatcttgtaaactggattttactatttaaacacaagttgtactttataaaccctaa 43304369  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 29262609 - 29262565
Alignment:
Q  207 gggtaaccttgtaaactgaaccgtagtatttaaacacaagttgta 251  Q
    |||||| |||||||||||||||||||| || ||||||||||||||    
T  29262609 gggtaaacttgtaaactgaaccgtagttttgaaacacaagttgta 29262565  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 23033555 - 23033519
Alignment:
Q  213 ccttgtaaactgaaccgtagtatttaaacacaagttg 249  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  23033555 ccttgtaaagtgaaccgtagtaattaaacacaagttg 23033519  T

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Target: scaffold0187 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 1847 - 1785
Alignment:
Q  205 aagggtaaccttgtaaactgaaccgtagtatttaaacacaagttgtactcaataaaccctaat 267  Q
    ||||||||  |||||| ||||||||||||||||||| ||||| ||||  | ||||||||||||    
T  1847 aagggtaattttgtaatctgaaccgtagtatttaaatacaaggtgtagactataaaccctaat 1785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 38270177 - 38270137
Alignment:
Q  134 gtatggctcatagtttactgaaaattgggcaggttgctcga 174  Q
    ||||| ||||||||||||||| |||||||||||| ||||||    
T  38270177 gtatgactcatagtttactgataattgggcaggtcgctcga 38270137  T

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