View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_19 (Length: 341)
Name: NF14723_low_19
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34980483 - 34980721
Alignment:
| Q |
1 |
gattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagtt |
100 |
Q |
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| T |
34980483 |
gattatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagtt |
34980582 |
T |
|
| Q |
101 |
ttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataag |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980583 |
ttgatttgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggacaaggttttccgattgaagcttctcgggacatggaattgattaagataag |
34980682 |
T |
|
| Q |
201 |
accaactaaactagttgaattacttatggatgtggcaag |
239 |
Q |
| |
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| T |
34980683 |
accaactaaactagttgaattacttatggatgtggcaag |
34980721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 34992889 - 34993115
Alignment:
| Q |
5 |
atattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttga |
104 |
Q |
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| T |
34992889 |
atattgaatatttgaaacaatttagtcaggttgatgcatcattaatggagcttgttaagatggttgaagttggagatcttcaaacactgcctagttttga |
34992988 |
T |
|
| Q |
105 |
ttcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagacca |
204 |
Q |
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| T |
34992989 |
ttcgtgtcgaatccaagatccaatgtcaacaaaggacgtttttggacaaggtttgcagattgaaggttcacgggatatggcattgattaagataagtcca |
34993088 |
T |
|
| Q |
205 |
actaaactagttgaattacttatggat |
231 |
Q |
| |
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| T |
34993089 |
actaaactagttgaagtacttatggat |
34993115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 34984937 - 34985164
Alignment:
| Q |
8 |
ttgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattc |
107 |
Q |
| |
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|||||||||||||||||||| | ||||||||| | ||| | | ||||||||| |||||||||||||||| ||| ||||| ||||||||||||||| |
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| T |
34984937 |
ttgaatatttgaaacaatttggctgtgttgatgcaacattattggagattgttaagttggttgaagttggagagcttcaaactttacctagttttgattt |
34985036 |
T |
|
| Q |
108 |
gtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaact |
207 |
Q |
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| T |
34985037 |
gtgtcgaaaccaaaattcaatgtatacaatggaagtttttgaacaaggtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaact |
34985136 |
T |
|
| Q |
208 |
aaactagttgaattacttatggatgtgg |
235 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
34985137 |
aaactagttgaattacttatggatgtgg |
34985164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 27542713 - 27542482
Alignment:
| Q |
4 |
tatattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttg |
103 |
Q |
| |
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||||||||| |||||||||||| | ||| |||||||||| | ||||| | ||| || | |||||||||||||||| || ||||| |||||||||||| |
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| T |
27542713 |
tatattgaaaatttgaaacaatatggtcgggttgatgcaacattaatggagattaataggttggttgaagttggagaattttaaactttacctagttttg |
27542614 |
T |
|
| Q |
104 |
attcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagacc |
203 |
Q |
| |
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||| ||||||||| ||||||||||||| |||| | |||||||||| |||||||| | ||||||||||| |||| |||||| ||||||||||||||| || |
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| T |
27542613 |
atttgtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgcagattgaagcttttcggaacatggcattgattaagataagtcc |
27542514 |
T |
|
| Q |
204 |
aactaaactagttgaattacttatggatgtgg |
235 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
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| T |
27542513 |
aactaaactagttgaaatacttatggatgtgg |
27542482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 27581603 - 27581375
Alignment:
| Q |
5 |
atattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttga |
104 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| | ||||| | ||| ||| | |||||||||||||||| ||| ||||| ||||||||||||| |
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| T |
27581603 |
atattgaatatttgaaacaatttggtcgggttgatgcaacattaatggagattattaggttggttgaagttggagagcttcaaactttacctagttttga |
27581504 |
T |
|
| Q |
105 |
ttcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagacca |
204 |
Q |
| |
|
|| ||| ||||||||||||||||| |||| |||||||| ||| |||||||| ||||||||| || ||||||||| |||| ||||||||| ||| |
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| T |
27581503 |
tttgtga--aaatcaaaatccaatgtacacaatggaagtttctggacaaggtttatagattgaagcctcgtgggacatggcattggttaagataattcca |
27581406 |
T |
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| Q |
205 |
actaaactagttgaattacttatggatgtgg |
235 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27581405 |
actaaactagttgaattacttatggatgtgg |
27581375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 27583001 - 27583233
Alignment:
| Q |
5 |
atattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttga |
104 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||||| | | ||| | ||||||| | |||||| ||||||||| ||| ||||| ||||||||||| | |
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| T |
27583001 |
atatttaatatttgaaacaatttggtcgggttgatgcaacatcaatggagattgttaggttggttggagttggagagcttcaaactttacctagttttaa |
27583100 |
T |
|
| Q |
105 |
ttcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaa--ttgattaagataagac |
202 |
Q |
| |
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|| ||||||||| ||||||||||||| |||| |||| ||||||| |||||||| ||||||||||||||| ||||||| | |||||||| ||| | |
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| T |
27583101 |
tttgtgtcgaaaccaaaatccaatgtacacaatggaaatttttggacaaggtttgttgattgaagcttctcgagacatggcatgttgattaatatatgtt |
27583200 |
T |
|
| Q |
203 |
caactaaactagttgaattacttatggatgtgg |
235 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
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| T |
27583201 |
caactaaactagatgaattacttatggatgtgg |
27583233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 27543677 - 27543854
Alignment:
| Q |
5 |
atattgaatatttgaaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttga |
104 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| | ||||| | ||||||| | || ||| ||||||||| ||| ||||| ||||||||||||| |
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| T |
27543677 |
atattgaatatttgaaacaatttggttgggttgatgcaacattaatggagattgttaggttgcttggagttggagagcttcaaactttacctagttttga |
27543776 |
T |
|
| Q |
105 |
ttcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
182 |
Q |
| |
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|| ||||||||| ||||||||||||| |||| |||||||||||| || ||||| | |||||||||||||| |||||| |
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|
| T |
27543777 |
tttgtgtcgaaaccaaaatccaatgtacacaatggaagtttttggacatggtttgcagattgaagcttctcaggacat |
27543854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 34980759 - 34980810
Alignment:
| Q |
275 |
aaaatctcacattacgatgacaattgcaacgtgatttttcttttatctttct |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34980759 |
aaaatctcacattacgatgacaattgcaacgtgatttttcttttatctttct |
34980810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 27543859 - 27543892
Alignment:
| Q |
202 |
ccaactaaactagttgaattacttatggatgtgg |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
27543859 |
ccaactaaactagttgaattacttatggatgtgg |
27543892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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