View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14723_low_21 (Length: 329)
Name: NF14723_low_21
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_21 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 53088965 - 53088645
Alignment:
| Q |
8 |
aatattgtgtaaaatgtagttgaactttgtgagttgacgactagtagagtagcagagtatggatacttgcatattgtggctgttccatgcattgtttaaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53088965 |
aatattgtgtaaaatgtagttgaactttgtgagttgacgactagtagagtagcagagtatggatacttgcatattgtggatgttccatgcattgtttaaa |
53088866 |
T |
|
| Q |
108 |
aaactagaccggaccgggaccgggctggtcgaattggttgagtcaaaactcaggtttggtgaaccggcggatcaatgcatggaccaggctaataaatatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53088865 |
aaactagaccggaccgggaccgggctggtcgaattggttgagtcaaaactcaggtttggtgaaccggcggatcaatacatggaccaggctaataaatatt |
53088766 |
T |
|
| Q |
208 |
ttttaaacataaactagaaactgctgctagaagaatccaattgggggagaaggagatcgtagatgtaccccttaacaatacaaatgttttggtcgaataa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53088765 |
ttttaaacataaactagaaactgctgctagcagaatccaact-ggggagaaggagatcgtagatgtaccccttaacaatacaaatgttttgatcgaataa |
53088667 |
T |
|
| Q |
308 |
aataaacatggaaaatcaaaat |
329 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
53088666 |
aataaacatggaaaatcaaaat |
53088645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 14333667 - 14333484
Alignment:
| Q |
8 |
aatattgtgtaaaatgtagttgaactttgtgagttgacgactagtagagtagcagagtatggatacttgcatattgtggctgttccatgcattgtttaaa |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14333667 |
aatattgtgtaaaatttagttgaactttgtgaagtgacgactagtagagtagcagtgtatagatacttgcatattgtggatgttccatgcattgtttaaa |
14333568 |
T |
|
| Q |
108 |
aaactagaccggaccgggaccgggctggtcgaattggttgagtcaaaactcaggtttggtgaacc-ggcggatcaatgcatggaccaggctaa |
199 |
Q |
| |
|
||||| ||||||| | ||||||||||||||||| | || ||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
14333567 |
gaactaaaccggactg---------tggtcgaattggttgagccgaacctcaggtttggtgaaccgggcggatcaaagcaaggaccaggctaa |
14333484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 329
Target Start/End: Complemental strand, 14333483 - 14333384
Alignment:
| Q |
225 |
aaactgctgctagaagaatccaattgggggagaaggagatcgtagatgtaccccttaacaatacaaatgttttggtcgaataaaataaacatggaaaatc |
324 |
Q |
| |
|
|||||||||||||||||||| || |||||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14333483 |
aaactgctgctagaagaatcgaac----ggagaacgcgatcatagatgtaccccttaacaatataaatgttttggtcgaataaaataaacat-gaaaatc |
14333389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University