View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_25 (Length: 322)
Name: NF14723_low_25
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 27 - 305
Target Start/End: Complemental strand, 54396429 - 54396151
Alignment:
| Q |
27 |
ggagattaagaacagattgtgagagagctaagagaacactttcttcaactgctcagacaacaatagaaattgattctttgtttgaaggaattgatttcta |
126 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396429 |
ggagattaagaacagcttgtgagagagctaagagaacactttcttcaactgctcagacaacaatagaaattgattctttgtttgaaggaattgatttcta |
54396330 |
T |
|
| Q |
127 |
tgcaactattacaagggcgagatttgaagaattgaatatggatttgtttaggaaatgtatggaacctgttgagaagtgtctaagggatgctaagattgat |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396329 |
tgcaactattacaagggcgagatttgaagaattgaatatggatttgtttaggaaatgtatggaacctgttgagaagtgtctaagggatgctaagattgat |
54396230 |
T |
|
| Q |
227 |
aagagtcatgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttct |
305 |
Q |
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| T |
54396229 |
aagagtcatgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttct |
54396151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 305
Target Start/End: Original strand, 23587897 - 23588173
Alignment:
| Q |
29 |
agattaagaacagattgtgagagagctaagagaacactttcttcaactgctcagacaacaatagaaattgattctttgtttgaaggaattgatttctatg |
128 |
Q |
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||||| ||||| | ||| |||||||||||||| || ||||| || |||||||| || || || ||||||||||| |||||||| || ||||| || || |
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| T |
23587897 |
agattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttaca |
23587996 |
T |
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| Q |
129 |
caactattacaagggcgagatttgaagaattgaatatggatttgtttaggaaatgtatggaacctgttgagaagtgtctaagggatgctaagattgataa |
228 |
Q |
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| || || || |||| | |||||||| | || |||||| |||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||| |
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| T |
23587997 |
ctaccatcactcgggctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaagtgtttgagggatgctaagatggataa |
23588096 |
T |
|
| Q |
229 |
gagtcatgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttct |
305 |
Q |
| |
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|| ||| ||||| |||||||||||||||||||| || |||||||| || |||||||| |||||||| ||||||| |
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| T |
23588097 |
gaacagtgtccatgatgttgttcttgttggtggatccactaggattcccaaggttcaacaacttttgcaagatttct |
23588173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 43 - 305
Target Start/End: Original strand, 23596763 - 23597025
Alignment:
| Q |
43 |
ttgtgagagagctaagagaacactttcttcaactgctcagacaacaatagaaattgattctttgtttgaaggaattgatttctatgcaactattacaagg |
142 |
Q |
| |
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|||||||||||||||||| || ||||| || |||||||| || || || |||||||||||||||||||| || ||||| || || | || ||||| | |
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| T |
23596763 |
ttgtgagagagctaagaggactctttcctctactgctcaaaccaccattgaaattgattctttgtttgagggtattgacttttacactaccattactcgc |
23596862 |
T |
|
| Q |
143 |
gcgagatttgaagaattgaatatggatttgtttaggaaatgtatggaacctgttgagaagtgtctaagggatgctaagattgataagagtcatgttcatg |
242 |
Q |
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|| | |||||||| | || |||||| | |||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||| |||| ||| |
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| T |
23596863 |
gctcgttttgaagagctcaacatggatctatttaggaagtgtatggagcctgttgagaagtgtttgagggatgctaagatggataagaacagtgttgatg |
23596962 |
T |
|
| Q |
243 |
aagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttct |
305 |
Q |
| |
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| |||||||||||||| ||||| || |||||||| || |||||||| |||||||| ||||||| |
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| T |
23596963 |
atgttgttcttgttggcggatcgactaggattcccaaggttcaacaacttttgcaagatttct |
23597025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 8102673 - 8102415
Alignment:
| Q |
27 |
ggagattaagaacagattgtgagagagctaagagaacactttcttcaactgctcagacaacaatagaaattgattctttgtttgaaggaattgatttcta |
126 |
Q |
| |
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||||||| ||||| | ||||||||||| |||||||| || || ||||| || || || || || || ||||||||||||||||| || ||||||| || |
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| T |
8102673 |
ggagattgagaaccgcatgtgagagagcgaagagaactctctcatcaaccgcacaaactaccattgagattgattctttgtttgagggtgttgattttta |
8102574 |
T |
|
| Q |
127 |
tgcaactattacaagggcgagatttgaagaattgaatatggatttgtttaggaaatgtatggaacctgttgagaagtgtctaagggatgctaagattgat |
226 |
Q |
| |
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| || || || | || |||||||| ||| | || |||||| |||| ||||| |||||||| ||||||||||||||| | || ||||||||||| || |
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| T |
8102573 |
caccacaatcacccgtgccagatttgaggaacttaacatggatctgttcaggaagtgtatggagcctgttgagaagtgtttgagagatgctaagatggac |
8102474 |
T |
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| Q |
227 |
aagagtcatgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagttca |
285 |
Q |
| |
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||||| |||||||| ||||||||||||||||| ||||| |||||||| |||||||| |
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| T |
8102473 |
aagagcacagttcatgatgttgttcttgttggtggttcaactaggattcccaaagttca |
8102415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 305
Target Start/End: Original strand, 8017586 - 8017853
Alignment:
| Q |
38 |
acagattgtgagagagctaagagaacactttcttcaactgctcagacaacaatagaaattgattctttgtttgaaggaattgatttctatgcaactatta |
137 |
Q |
| |
|
|||| |||||||||||| |||||||| || ||||| ||||| || || || || || ||||||||||||||||| || ||||||| || | || || | |
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| T |
8017586 |
acagcttgtgagagagcgaagagaactctctcttctactgcacaaactaccattgagattgattctttgtttgagggtgttgatttttacaccacaatca |
8017685 |
T |
|
| Q |
138 |
caagggcgagatttgaagaattgaatatggatttgtttaggaaatgtatggaacctgttgagaagtgtctaagggatgctaagattgataagagtcatgt |
237 |
Q |
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| | || |||||||| ||| | || |||||| |||| || || |||||||| ||||||||||||||| | || ||||||||||| || |||| ||| |
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| T |
8017686 |
cccgtgcaagatttgaggaacttaacatggatctgttcagaaagtgtatggagcctgttgagaagtgtttgagagatgctaagatggacaagaactctgt |
8017785 |
T |
|
| Q |
238 |
tcatgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttct |
305 |
Q |
| |
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|||||| |||||||||||||| || ||||| || ||||| |||||||| || || ||||| ||||||| |
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| T |
8017786 |
tcatgatgttgttcttgttggcggttcaactagaattcccaaagttcagcaactgttgcaagatttct |
8017853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 43 - 305
Target Start/End: Complemental strand, 39985636 - 39985374
Alignment:
| Q |
43 |
ttgtgagagagctaagagaacactttcttcaactgctcagacaacaatagaaattgattctttgtttgaaggaattgatttctatgcaactattacaagg |
142 |
Q |
| |
|
|||||| ||||| |||||||| || ||||| ||||| ||||| || || |||||||||||| | |||||||||||||||||||| | | ||||| | |
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| T |
39985636 |
ttgtgaaagagcgaagagaactctctcttctactgcccagaccaccattgaaattgattctctttttgaaggaattgatttctactcccccattactcgt |
39985537 |
T |
|
| Q |
143 |
gcgagatttgaagaattgaatatggatttgtttaggaaatgtatggaacctgttgagaagtgtctaagggatgctaagattgataagagtcatgttcatg |
242 |
Q |
| |
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|| |||||||| || | || |||||| | ||||| ||||||||||| || |||||||| ||| | || ||||| ||||| || |||| ||| || | |
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| T |
39985536 |
gcaagatttgaggagctcaacatggatctctttagaaaatgtatggagccagttgagaaatgtttgagagatgccaagatggacaagaaaagtgtccacg |
39985437 |
T |
|
| Q |
243 |
aagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatttct |
305 |
Q |
| |
|
| ||||| ||||| || || || || || |||||||| |||||||| |||||||| ||||||| |
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|
| T |
39985436 |
atgttgtccttgtaggaggttctaccagaattccaaaggttcaacaacttttgcaagatttct |
39985374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 282
Target Start/End: Complemental strand, 17267779 - 17267690
Alignment:
| Q |
193 |
tgttgagaagtgtctaagggatgctaagattgataagagtcatgttcatgaagttgttcttgttggtggatcaacaaggattccaaaagt |
282 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||| ||| |||| ||||| ||||||||||| || | |||||||| ||||| |
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| T |
17267779 |
tgttgagaagtgtcttagtgatgctaagattgacaagagcagagttgatgatgttgtccttgttggtgggtcttctaggattccgaaagt |
17267690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 43744610 - 43744549
Alignment:
| Q |
239 |
catgaagttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcagga |
300 |
Q |
| |
|
||||| ||||||||||||||||| || | |||||||||||||| ||||| || |||||||| |
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|
| T |
43744610 |
catgatgttgttcttgttggtggctcctctaggattccaaaagtacaacaactattgcagga |
43744549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 42325181 - 42325237
Alignment:
| Q |
246 |
ttgttcttgttggtggatcaacaaggattccaaaagttcaacagcttttgcaggatt |
302 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || ||||| |||||| |||||| |
|
|
| T |
42325181 |
ttgttcttgttggtggaagcacaaggattccaaaggtacaacaacttttgaaggatt |
42325237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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