View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_28 (Length: 271)
Name: NF14723_low_28
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_28 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 27 - 271
Target Start/End: Complemental strand, 8586977 - 8586735
Alignment:
| Q |
27 |
actcacctgaaagcaaaatcaaacaagacaggaacaattggagttgtagattgacactgcaaaataaaaaggaaaggtaaataaggagtggaggatagtt |
126 |
Q |
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| T |
8586977 |
actcacctgaaagcaaaatcaaacaagacaggaacaattggagctgtagattgacactgcaaaataaaa-ggaaaggtaaataaggagtggaggatagtt |
8586879 |
T |
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| Q |
127 |
agttagcttgaaaatgtagaatccgattctgatgtaacaatacaagaaaaagtaattaaataaatgaaaatgccccaaactattgtaacaaatgtgacag |
226 |
Q |
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| T |
8586878 |
agttagcttgaaaatgtagaatccgattctgatgtaacaatacaagaaaaagtaattaaataaatgaagatgccccaaactattgtagcaaatgtgacag |
8586779 |
T |
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| Q |
227 |
agattgatnnnnnnnnntgtcacagagatgaaaactagagatgca |
271 |
Q |
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| T |
8586778 |
agattgat-aaaaaaaatgtcacagagatgaaaactagagatgca |
8586735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 5362747 - 5362634
Alignment:
| Q |
17 |
atgaaaggaaactcacctgaaagcaaaatcaaacaagacaggaacaattggagttgtagattgacactgcaaaataaaaaggaaaggtaaataaggagtg |
116 |
Q |
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| T |
5362747 |
atgaaaggaaactcaccggaaagcaaaagcaaacaagaggagaaagattggagcagcagatttacactgcaaaat-aaaaggaaaagtaaataaggaggg |
5362649 |
T |
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| Q |
117 |
g-aggatagttagtt |
130 |
Q |
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| T |
5362648 |
gaaggatagttagtt |
5362634 |
T |
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