View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14723_low_31 (Length: 239)

Name: NF14723_low_31
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14723_low_31
NF14723_low_31
[»] chr4 (1 HSPs)
chr4 (1-223)||(44261996-44262218)
[»] chr6 (10 HSPs)
chr6 (102-222)||(24936374-24936495)
chr6 (17-88)||(24935057-24935128)
chr6 (1-101)||(29949422-29949522)
chr6 (1-101)||(29953219-29953319)
chr6 (1-74)||(30053802-30053875)
chr6 (1-64)||(24738757-24738820)
chr6 (1-62)||(21160189-21160250)
chr6 (17-81)||(30135516-30135580)
chr6 (1-64)||(30149901-30149964)
chr6 (20-73)||(24263305-24263358)
[»] scaffold0086 (1 HSPs)
scaffold0086 (18-73)||(30871-30926)
[»] chr8 (1 HSPs)
chr8 (1-64)||(9782920-9782983)
[»] scaffold2177 (1 HSPs)
scaffold2177 (9-64)||(286-341)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-64)||(43431-43494)
[»] scaffold0019 (1 HSPs)
scaffold0019 (18-64)||(125685-125731)
[»] scaffold0014 (1 HSPs)
scaffold0014 (20-73)||(137767-137820)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44262218 - 44261996
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaatgtaaaaccaggtgacatgtgttcaag 100  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44262218 tttgtttgaaaatggcaagaatgataagacggtgaaacttcttcgtgaaatgattgttagaggtatattgtaatgtaaaaccaggtgacatgtgttcaag 44262119  T
Q  101 tcacatggtgtaataatctaatgactaatgatatcaagttaatgattatatgcttctatttttccagtttcaaagatcttaatgtcctatgtcaattaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44262118 tcacatggtgtaataatctaatgactaatgatatcaagttaatgattatatgcttctatttttccagtttcaaagatcttaatgtcctatgtcaattaga 44262019  T
Q  201 tatacatgatgatttgttgtaac 223  Q
    |||||||||||||||||||||||    
T  44262018 tatacatgatgatttgttgtaac 44261996  T

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Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 24936374 - 24936495
Alignment:
Q  102 cacatggtgtaataa-tctaatgactaatgatatcaagttaatgattatatgcttctatttttccagtttcaaagatcttaatgtcctatgtcaattaga 200  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  24936374 cacattgtgtaataaatctaatgactaatgatatcaagttaatgattataagcttcaatttttccagtttcgaagatcttaatgtcctatgtcaattaga 24936473  T
Q  201 tatacatgatgatttgttgtaa 222  Q
    ||||||||||||||||||||||    
T  24936474 tatacatgatgatttgttgtaa 24936495  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 24935057 - 24935128
Alignment:
Q  17 aagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaatgtaaaaccaggtga 88  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||    
T  24935057 aagaatgataaggcggtgaaacttctacgtgaaatgattgctagaggtatattgtaatgtaaaaccaggtga 24935128  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29949522 - 29949422
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaatgtaaaaccaggtgacatgtgttcaag 100  Q
    |||||| ||||||  ||||||||||||||| || |||||||||| ||||||||||||||||||| || | ||||||||||| |||||| |||  ||||||    
T  29949522 tttgttcgaaaacaacaagaatgataaggctgttaaacttcttcgtgaaatgattgttagaggtctactataatgtaaaactaggtgagatgctttcaag 29949423  T
Q  101 t 101  Q
    |    
T  29949422 t 29949422  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29953319 - 29953219
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaatgtaaaaccaggtgacatgtgttcaag 100  Q
    |||||| ||||||  ||||||||||||||| || |||||||||| ||||||||||||||||||| || | ||||||||||| |||||| |||  ||||||    
T  29953319 tttgttcgaaaacaacaagaatgataaggctgttaaacttcttcgtgaaatgattgttagaggtctactataatgtaaaactaggtgagatgctttcaag 29953220  T
Q  101 t 101  Q
    |    
T  29953219 t 29953219  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 30053802 - 30053875
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaat 74  Q
    |||||| ||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| || || ||||||    
T  30053802 tttgttcgaaaacgacaagaatgataaggcgctgacacttcttcgtgaaatgattgttagacgtctactgtaat 30053875  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24738820 - 24738757
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggt 64  Q
    |||||||||||||| || |||||||||||| ||| ||||||||| ||||||||||| |||||||    
T  24738820 tttgtttgaaaacgacatgaatgataaggcagtggaacttcttcgtgaaatgattgctagaggt 24738757  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 21160250 - 21160189
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagag 62  Q
    |||||||||||||| || |||||||||||| ||| ||||||||| | |||||||||||||||    
T  21160250 tttgtttgaaaacgacatgaatgataaggcagtggaacttcttcgtaaaatgattgttagag 21160189  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 30135516 - 30135580
Alignment:
Q  17 aagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaatgtaaaac 81  Q
    |||||||||||||| ||||||||||||  ||||||||||| ||||||| || |||||| ||||||    
T  30135516 aagaatgataaggcagtgaaacttctttgtgaaatgattgatagaggtctactgtaatctaaaac 30135580  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30149901 - 30149964
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggt 64  Q
    ||||||||||| || ||  |||||||||||||||||| || ||| ||||||||||| |||||||    
T  30149901 tttgtttgaaagcgacagaaatgataaggcggtgaaatttattcgtgaaatgattgctagaggt 30149964  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 24263358 - 24263305
Alignment:
Q  20 aatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaa 73  Q
    ||||||||||||| ||||||||||| ||||||||||   |||||| ||||||||    
T  24263358 aatgataaggcggagaaacttcttcgtgaaatgattacaagaggtctattgtaa 24263305  T

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Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 30926 - 30871
Alignment:
Q  18 agaatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaa 73  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||    
T  30926 agaatgaaaaggcggagaaacttcttcgtgaaatgattgttagaggtctattgtaa 30871  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9782920 - 9782983
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggt 64  Q
    ||||||||||| || | | ||||||||||||||||||||||||  ||||||||||| |||||||    
T  9782920 tttgtttgaaagcgaccaaaatgataaggcggtgaaacttctttgtgaaatgattgctagaggt 9782983  T

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Target: scaffold2177 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold2177
Description:

Target: scaffold2177; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 286 - 341
Alignment:
Q  9 aaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggt 64  Q
    ||||| |||||||||||||||| | |||  |||||||||||||||||| |||||||    
T  286 aaaaccgcaagaatgataaggcagagaagattcttcatgaaatgattgatagaggt 341  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43494 - 43431
Alignment:
Q  1 tttgtttgaaaacggcaagaatgataaggcggtgaaacttcttcatgaaatgattgttagaggt 64  Q
    |||||||||||||  ||  ||||||||||||||||||||  ||| ||||||||||| |||||||    
T  43494 tttgtttgaaaacaacagaaatgataaggcggtgaaactgattcgtgaaatgattgctagaggt 43431  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 125731 - 125685
Alignment:
Q  18 agaatgataaggcggtgaaacttcttcatgaaatgattgttagaggt 64  Q
    ||||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  125731 agaatgaaaaggcggagaaacttcttcgtgaaatgattgctagaggt 125685  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 137767 - 137820
Alignment:
Q  20 aatgataaggcggtgaaacttcttcatgaaatgattgttagaggtatattgtaa 73  Q
    ||||| ||||||| ||||||||||| ||||||| ||| ||||||| ||||||||    
T  137767 aatgaaaaggcggagaaacttcttcgtgaaatggttgctagaggtctattgtaa 137820  T

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