View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_36 (Length: 210)
Name: NF14723_low_36
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 29204514 - 29204317
Alignment:
| Q |
1 |
gatgagagatttaatgcgaagatgtctatcttgagtttccaaggaggaagcagacggcgcctatgatgatctactac---gttcaaatgacagagtgttg |
97 |
Q |
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| T |
29204514 |
gatgagagatttaatgcgaagatgtctatcttgagtttccaaggaggaagcagacggcgcctatgatgatctactactacgttcaaatgacagagtgttg |
29204415 |
T |
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| Q |
98 |
gactagttatgtttaagtcagaatcaaattcacagttttgaagtgtgagggatacaagattgatgccgttagaaatagacccaaaagcatatgtttct |
195 |
Q |
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| T |
29204414 |
gactagttatgtttaagtcagaatcaaattcacagttttgaagtgtgagggatacaagattgatgccgttagaaatagacccaaaagcatatgtttct |
29204317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 29196009 - 29196137
Alignment:
| Q |
66 |
atgatctactacgttcaaatgacagagtgttggactagttatgtttaagtcagaatcaaattcacagttttgaagtgtgagggatacaagattgatgccg |
165 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||| | ||||||||| |||| |
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| T |
29196009 |
atgatcgactatgttcaaatgacagagtgttggacaagttatgtttaagtcagaatcaaatttgcagttgttaagtgtgaggtctgcaagattgacgccg |
29196108 |
T |
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| Q |
166 |
ttag-aaatagacccaaaagcatatgttt |
193 |
Q |
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|||| ||||| |||||||||||||||||| |
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| T |
29196109 |
ttagaaaataaacccaaaagcatatgttt |
29196137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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