View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_38 (Length: 203)
Name: NF14723_low_38
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 10388922 - 10389023
Alignment:
| Q |
14 |
atgaatgatgcaatggttctaaatttttaaggttgagcatgagtgtaccacataaaggatcttgtgcttgcttcacttaaccaacgtactgttcgagcac |
113 |
Q |
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| T |
10388922 |
atgaatgatgcaatggttctaaatttttaaggttgagcatgagtgtaccacataaaggatcttgtgcttgcttcacttaaccaacgtactgttcgagcac |
10389021 |
T |
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| Q |
114 |
at |
115 |
Q |
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|| |
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| T |
10389022 |
at |
10389023 |
T |
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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 32221701 - 32221853
Alignment:
| Q |
28 |
ggttctaaatttttaaggttgagcatgagtgtaccacataaaggatcttgtgcttgcttcacttaaccaacgtactgttcgagcacatggactatgattt |
127 |
Q |
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| T |
32221701 |
ggttctaaatttt-aaggttgagcatgagcttaccagttaa-ggatattgtgcttgctttagttaaccaacctcctgttcgaacacatggaataagtttt |
32221798 |
T |
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| Q |
128 |
atttggtaaattaaagcaaatctatatctttatgaatttgagcttgagtaccatt |
182 |
Q |
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| T |
32221799 |
atttggtaaattaaagcacatgtatatttttatgaacttgagctcgagtaccatt |
32221853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 19106089 - 19105981
Alignment:
| Q |
70 |
ggatcttgtgcttgcttcacttaaccaacgtactgttcgagcacatggactatgatttatttggtaaattaaagcaaatctatatctttatgaatttgag |
169 |
Q |
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| T |
19106089 |
ggatcttgtgcttgcttcgctgtaccaacttcc-gttcaagcacatcgacta-gtttcttttggtaaattaaagcacatgtatatctttgtgaatttgag |
19105992 |
T |
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| Q |
170 |
cttgagtacca |
180 |
Q |
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| T |
19105991 |
ctccagtacca |
19105981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 11981863 - 11982029
Alignment:
| Q |
15 |
tgaatgatgcaatggttctaaatttttaaggttgagcatgagtgtaccacataa--aggatcttgtgcttgcttcacttaaccaacgtactgttcgagca |
112 |
Q |
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| T |
11981863 |
tgaatgatgcaatggttctaaattt--aaggatgagctt------accacataagaaggatcttgtgcttgcttcaataagccaacctcgtgttcgagca |
11981954 |
T |
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| Q |
113 |
catggactatgatttatttggtaaattaaagcaaatctatatctttatgaatttgagcttgagtaccattttttg |
187 |
Q |
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| T |
11981955 |
cttggtctaagttttctttggtaaatttgagcacacgtatatctttatgaatttgagctcgagtaccattttttg |
11982029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 30655065 - 30654983
Alignment:
| Q |
104 |
gttcgagcacatggactatgatttatttggtaaattaaagcaaatctatatctttatgaatttgagcttgagtaccattttttg |
187 |
Q |
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|||| ||||||||||||| | || ||||||||||||| ||| | ||||||||| |||||||||||| |||||||||||||| |
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| T |
30655065 |
gttcaagcacatggacta-gtttcttttggtaaattaatgcacacgtatatctttgtgaatttgagctccagtaccattttttg |
30654983 |
T |
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