View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_39 (Length: 202)
Name: NF14723_low_39
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 12915532 - 12915363
Alignment:
| Q |
20 |
acccagacaaacatcctcctgaaaaaagaatggaagctgaacgcagatttattctcatttctcaagcttatgatattctcagtaatcctgtaaagcggaa |
119 |
Q |
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| T |
12915532 |
acccagacaaacatcctcctgaaaaaagaatcgaagctgaacacagatttattctcatttctcaagcttatgatattctcagtaatcccgtaaagcggaa |
12915433 |
T |
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| Q |
120 |
aatctacgaccaatacggtgaagaaggccttcaatatggtggtgccgcccctccccaacattgttcttct |
189 |
Q |
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| T |
12915432 |
aatctacgaccaatacggtgaagaaggccttcaatacggtggcgccgcccctccccaacattcttcttct |
12915363 |
T |
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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 4535279 - 4535427
Alignment:
| Q |
39 |
tgaaaaaagaatggaagctgaacgcagatttattctcatttctcaagcttatgatattctcagtaatcctgtaaagcggaaaatctacgaccaatacggt |
138 |
Q |
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||||||||||||||| | |||||||| ||| |||||| |||| |||||||| ||||||||| |||||| ||||| |||||||| ||| |||||||||| |
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| T |
4535279 |
tgaaaaaagaatggatgttgaacgcatattcattctcgtttcacaagcttacgatattctccgtaatctagtaaaacggaaaatatacaaccaatacggc |
4535378 |
T |
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| Q |
139 |
gaagaaggccttcaatatggtggtgccgcccctccccaacattgttctt |
187 |
Q |
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| T |
4535379 |
gaagagggcattcaatacggtcgtgccgcccctccccgacattcttctt |
4535427 |
T |
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