View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14723_low_5 (Length: 613)

Name: NF14723_low_5
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14723_low_5
NF14723_low_5
[»] chr3 (2 HSPs)
chr3 (36-592)||(14854264-14854823)
chr3 (459-516)||(40755767-40755823)
[»] chr8 (2 HSPs)
chr8 (51-423)||(15729178-15729557)
chr8 (207-378)||(30998529-30998703)
[»] chr5 (2 HSPs)
chr5 (43-111)||(27512291-27512359)
chr5 (300-384)||(40973540-40973625)
[»] chr4 (2 HSPs)
chr4 (207-363)||(20401520-20401677)
chr4 (265-384)||(40346017-40346137)
[»] chr7 (5 HSPs)
chr7 (268-384)||(29626663-29626780)
chr7 (265-384)||(32575219-32575339)
chr7 (265-383)||(19323975-19324094)
chr7 (300-384)||(18299714-18299799)
chr7 (300-384)||(38141989-38142074)
[»] chr6 (1 HSPs)
chr6 (265-384)||(7093672-7093792)
[»] chr1 (3 HSPs)
chr1 (161-253)||(17416227-17416318)
chr1 (308-405)||(16967614-16967712)
chr1 (470-516)||(39675694-39675740)
[»] scaffold0432 (1 HSPs)
scaffold0432 (300-384)||(8850-8935)
[»] chr2 (1 HSPs)
chr2 (450-490)||(4539272-4539312)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 36 - 592
Target Start/End: Original strand, 14854264 - 14854823
Alignment:
Q  36 aagaagctaaaataaaatatattattgaactgtctggaaattaaagcacaagaagtgccaaaaaccagcaaaaatgggtatcagtttacatcaagaatca 135  Q
    |||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  14854264 aagaagttaaaatagaatatattattcaactgtctggaaattaaagcacaagaagtgccaaaaaccagcaaaaatgggtatcagtttacatcaagaaata 14854363  T
Q  136 ataatgcatggggaaagaaaaaggc-caaatccgcctctttacaaaaatattcccaaacaagataaaggacaaagccaccacaaatgataagtaaaagaa 234  Q
    | ||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14854364 acaatgcatggggaaagaaaaagggtcaaatccgcccctttacaaaaatattcccaaacaagataaaggacaaagccaccacaaatgataagtaaaagaa 14854463  T
Q  235 aaattagggcgattcactt-caaacaccaaaatgattgaagtttaattttgtaaagcaaatgtgttaacgatgcctctttttgattaaaaacc-gagcat 332  Q
    |||||||| |||||| ||| || ||||||| ||||||||||||||||||||| || || ||||||||||||  |||||||||||| ||||||| ||||||    
T  14854464 aaattaggacgattcgctttcagacaccaatatgattgaagtttaattttgtcaaccagatgtgttaacgagacctctttttgatcaaaaacccgagcat 14854563  T
Q  333 ttctttcgctccaaatcacccatacacatgagaaccaaatgagattaaaagcagaacatatacttttagaaaaaccgcctaagatttcaaatgaggcctc 432  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  14854564 ttctttcgctccaaatcactcatacacacgagagccaaatgagattaaaagcagaacatatacctttaggaaaaccgccaaagatttcaaatgaggcctc 14854663  T
Q  433 tttttaatgtttaaagggtgaaaatattttattcttgaaaataaaacacaactaccaacaactacccactttcctctattatttctcatatgtttatcat 532  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14854664 tttttaatgtttaaagggtgaaaatattttattcttggaaataaaacacaactaccaacaactacccacttttctctattatttctcatatgtttatcat 14854763  T
Q  533 ttttaaataaaataaattattattaaagttttctaagaatatcagtttggcttgctgttg 592  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  14854764 ttttaaattaaataaattattattaaagttttctatgaatatcagtttgacttgctgttg 14854823  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 40755823 - 40755767
Alignment:
Q  459 ttttattcttgaaaataaaacacaactaccaacaactacccactttcctctattattt 516  Q
    |||||||| |||||||||||||||||||  ||  ||||| ||||||||||||||||||    
T  40755823 ttttattcatgaaaataaaacacaactattaa-tactacacactttcctctattattt 40755767  T

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Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 51 - 423
Target Start/End: Complemental strand, 15729557 - 15729178
Alignment:
Q  51 aatatattattgaactgtctggaaattaaagcacaagaagtgccaaaaaccagcaaaaatgggtatcagtttacatcaagaatcaataatgcatggggaa 150  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||||| | | ||||||  |||||||||||||||||||| ||| || || | |||||    
T  15729557 aatatattattaaactgcctggaaattacagcacaagaagtgccaaaaatctgtaaaaattagtatcagtttacatcaagaaacaacaaggcctagggaa 15729458  T
Q  151 agaaaaa-ggccaaatccgcctctttacaaaaatattcccaaacaagataaaggacaaagccaccacaaatgataagtaaaagaaaaattagggcgattc 249  Q
    ||||||| || |||||| ||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||  ||||||||| |||||     
T  15729457 agaaaaagggtcaaatctgcccctttacaaaaatattctcaaacaagataaaagactaagccaccacaaatgataagtaaaatcaaaattaggacgattt 15729358  T
Q  250 ac-ttcaaacaccaaaatgattgaagtttaattttgtaaagcaaatgtgttaacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaa 347  Q
     | ||||  |||||| ||||||||||||||||||||| ||| | ||| ||||| || |||||||||| ||| || ||| |||||||| ||| ||||||||    
T  15729357 gctttcagccaccaatatgattgaagtttaattttgttaagtagatgagttaatgaggcctcttttttattcaagacctgagcatttttttggctccaaa 15729258  T
Q  348 ----tcacccatacacatgagaaccaaatgagattaaaagcagaacatatacttttagaaaaaccgcctaagatttcaaa 423  Q
        |||| ||||||| ||| | ||||||||||||||||| | |||  |||||||||| ||||||||||||| |||||||    
T  15729257 tcactcactcatacacttgaaagccaaatgagattaaaagaaaaacggatacttttaggaaaaccgcctaaggtttcaaa 15729178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 378
Target Start/End: Original strand, 30998529 - 30998703
Alignment:
Q  207 aagccaccacaaatgataagtaaaagaaaaattagggcgattcactt-caaacaccaaaatgattgaagtttaattttgtaaagca-aatgtgttaacga 304  Q
    |||| ||||||  ||||||||||||| ||||||| | |||||| ||| || ||| ||| |||||||||  |||||||||| ||| | ||| ||| || ||    
T  30998529 aagctaccacatgtgataagtaaaagcaaaattaagccgattcgctttcagacatcaatatgattgaaacttaattttgtcaagaagaatttgtaaaaga 30998628  T
Q  305 tgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatgagaaccaaatgagatt 378  Q
     | ||||||||||| ||| ||| ||||||||||||| ||| |||| ||||| ||||| |  | ||||||||||||    
T  30998629 ggtctctttttgatgaaacacccgagcatttctttcactctaaattacccacacacaagtcagccaaatgagatt 30998703  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 27512359 - 27512291
Alignment:
Q  43 taaaataaaatatattattgaactgtctggaaattaaagcacaagaagtgccaaaaaccagcaaaaatg 111  Q
    ||||||||||||||||| ||||||| || |||| || |||||||||||||||||||| |||||||||||    
T  27512359 taaaataaaatatattactgaactgcctcgaaaatacagcacaagaagtgccaaaaatcagcaaaaatg 27512291  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 40973540 - 40973625
Alignment:
Q  300 aacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatgagaaccaaatgagattaaaagc 384  Q
    ||||| ||||||||||||| ||| ||| |||| ||||||||  ||||||| ||||| ||||| || | ||| ||||||||||||||    
T  40973540 aacgaggcctctttttgatgaaagacccgagcgtttctttctatccaaataacccacacacaagaaagccatatgagattaaaagc 40973625  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 207 - 363
Target Start/End: Complemental strand, 20401677 - 20401520
Alignment:
Q  207 aagccaccacaaatgataagtaaaagaaaaattagggcgattcactt-caaacaccaaaatgattgaagtttaattttgtaaagcaaatgtgttaacgat 305  Q
    ||||||||||||||||||||  |||| |||||||||  ||||| ||| ||| |||||| | |||| ||| ||||||| ||  ||||| |||  ||| ||     
T  20401677 aagccaccacaaatgataagagaaagtaaaattaggatgattcgctttcaaccaccaataagattaaagcttaattt-gtcgagcaattgtagtaatgag 20401579  T
Q  306 gcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatga 363  Q
     |||||||||||| ||| ||| |||||||||||||  |||||||||| |||||||||||    
T  20401578 acctctttttgatgaaatacccgagcatttctttcaatccaaatcactcatacacatga 20401520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 40346017 - 40346137
Alignment:
Q  265 atgattgaagtttaattttgtaaagcaaatgtgttaacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatga 363  Q
    ||||||||||||||||||| |  || || ||  | ||||| ||||||||||||| ||| ||| |||  ||||||||  ||||||||||||| ||||| ||    
T  40346017 atgattgaagtttaattttatctagtaattgaatgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaaga 40346116  T
Q  364 gaaccaaatgagattaaaagc 384  Q
     | ||| ||||||||||||||    
T  40346117 aagccatatgagattaaaagc 40346137  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 384
Target Start/End: Complemental strand, 29626780 - 29626663
Alignment:
Q  268 attgaagtttaattttgtaaagcaaatgtgttaacgatgcctctttttgattaaaaa-ccgagcatttctttcgctccaaatcacccatacacatgagaa 366  Q
    |||||||||||||||| | ||| || ||  | ||||| ||||||||||||| ||| | |||||  ||||||||  ||||||||||||| ||||| || |     
T  29626780 attgaagtttaattttatcaagtaattgaatgaacgaggcctctttttgatgaaagatccgagtgtttctttctatccaaatcacccacacacaagaaag 29626681  T
Q  367 ccaaatgagattaaaagc 384  Q
    ||| ||||||||||||||    
T  29626680 ccatatgagattaaaagc 29626663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 384
Target Start/End: Complemental strand, 32575339 - 32575219
Alignment:
Q  265 atgattgaagtttaattttgtaaagcaaatgtgttaacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatga 363  Q
    ||||||||||||||||||| |  || || ||  | ||||| ||||||||||||| ||| ||| |||  ||||||||  ||||||||||||| ||||| ||    
T  32575339 atgattgaagtttaattttatctagtaattgattgaacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaaga 32575240  T
Q  364 gaaccaaatgagattaaaagc 384  Q
     | ||| ||||||||||||||    
T  32575239 aagccatatgagattaaaagc 32575219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 19324094 - 19323975
Alignment:
Q  265 atgattgaagtttaattttgtaaagcaaatgtgttaacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatga 363  Q
    ||||||||||||||||||| |  || || ||  | ||||| ||||||||||||| ||| ||| |||| ||||||||  ||||||||||||| ||||| ||    
T  19324094 atgattgaagtttaattttatctagtaattgattgaacgaggcctctttttgatgaaagacccgagcgtttctttctatccaaatcacccacacacaaga 19323995  T
Q  364 gaaccaaatgagattaaaag 383  Q
     | ||| ||||| |||||||    
T  19323994 aagccatatgaggttaaaag 19323975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 384
Target Start/End: Original strand, 18299714 - 18299799
Alignment:
Q  300 aacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatgagaaccaaatgagattaaaagc 384  Q
    ||||| ||||||||||||| ||| ||| ||||  |||||||  ||||||||||||| ||||| || | ||| ||||||||||||||    
T  18299714 aacgaggcctctttttgatgaaagacccgagcgattctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 18299799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 38142074 - 38141989
Alignment:
Q  300 aacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatgagaaccaaatgagattaaaagc 384  Q
    ||||| ||||||||||||| ||| ||| |||  ||||||||  ||||||||||||| ||||| || | ||| ||||||||||||||    
T  38142074 aacgaggcctctttttgatgaaagacccgagtgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 38141989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 384
Target Start/End: Complemental strand, 7093792 - 7093672
Alignment:
Q  265 atgattgaagtttaattttgtaaagcaaatgtgttaacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatga 363  Q
    ||||||||||||||||||| |  || || ||  | ||||| ||||||||||||| ||| ||| |||  ||||||||  ||||||||||||| ||||| ||    
T  7093792 atgattgaagtttaattttatctagtaattgaatgaacgaggcctctttttgatgaaagacctgagtgtttctttctatccaaatcacccacacacaaga 7093693  T
Q  364 gaaccaaatgagattaaaagc 384  Q
     | ||| ||||||||||||||    
T  7093692 aagccatatgagattaaaagc 7093672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 17416318 - 17416227
Alignment:
Q  161 caaatccgcctctttacaaaaatattcccaaacaagataaaggacaaagccaccacaaatgataagtaaaagaaaaattagggcgattcactt 253  Q
    ||||||| || | ||||||||| || |||||| ||| |||||||  ||||||| ||||||||||||| |||| |||||| || ||||||||||    
T  17416318 caaatccaccccattacaaaaagatgcccaaagaaggtaaaggattaagccac-acaaatgataagtgaaagcaaaattcggacgattcactt 17416227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 16967614 - 16967712
Alignment:
Q  308 ctctttttgattaaa-aaccgagcatttctttcgctccaaatcacccatacacatgagaaccaaatgagattaaaagcagaacatatacttttagaaaa 405  Q
    ||||||||||| ||| || ||| ||||||||||  |||||||||| || |||||| | | |||||||||  |||||||  ||||||||||||| |||||    
T  16967614 ctctttttgatgaaataatcgatcatttctttcaatccaaatcactcacacacattaaagccaaatgagggtaaaagctaaacatatactttttgaaaa 16967712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 516
Target Start/End: Complemental strand, 39675740 - 39675694
Alignment:
Q  470 aaaataaaacacaactaccaacaactacccactttcctctattattt 516  Q
    |||| |||| ||||||||||| |||||||||||||||| ||||||||    
T  39675740 aaaaaaaaatacaactaccaagaactacccactttcctatattattt 39675694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 8935 - 8850
Alignment:
Q  300 aacgatgcctctttttgattaaaaacc-gagcatttctttcgctccaaatcacccatacacatgagaaccaaatgagattaaaagc 384  Q
    ||||| ||||||||| ||| ||| ||| |||| ||||||||  ||||||||||||| ||||| || | ||| ||||||||||||||    
T  8935 aacgaggcctcttttagatgaaagacccgagcgtttctttctatccaaatcacccacacacaagaaagccatatgagattaaaagc 8850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 4539272 - 4539312
Alignment:
Q  450 gtgaaaatattttattcttgaaaataaaacacaactaccaa 490  Q
    |||| ||| ||||||| ||||||||||||||||||||||||    
T  4539272 gtgagaatcttttatttttgaaaataaaacacaactaccaa 4539312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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