View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14723_low_6 (Length: 600)
Name: NF14723_low_6
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 5319148 - 5318571
Alignment:
| Q |
1 |
ttggtcatggaggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttaccatttcaagtcaagtgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5319148 |
ttggtcatggaggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttaccatttcaagtcaagtgtca |
5319049 |
T |
|
| Q |
101 |
tgtaggttatatcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgacttcaagagcctcaacgttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5319048 |
tgtaggttatatcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgacttcaagagcctcaacgttta |
5318949 |
T |
|
| Q |
201 |
gcagatgaaatatgttctgctttgcatcaagggatagagccagaaggtgttgctattgtactacaatgcacacatatcccttttccatacaaagatatcg |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5318948 |
gcagatgagatatgttctgctttgcatcaagggatagagccagaaggtgttgctattgtactacaatgcacacatatcccttttccatacaaagatatcg |
5318849 |
T |
|
| Q |
301 |
actcaaacgatatagggtgggttaagttacttgtttcttcaggatctggtgtttatgagaacaaaaatgctgaaatgtggagtgatttctttagtcttct |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5318848 |
aatcaaacgatatagggtgggttaagttacttgtttcttcaggatctggtgtttatgagaacaaaaatgctgaaatgtggagtgatttctttagtcttct |
5318749 |
T |
|
| Q |
401 |
taagtttagaggtattgacaatgacaaagttcgtcttaaaggaccactcggtcaatgttggtgtccttctctatatgctgaagtttcatccaagattaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5318748 |
taagtttagaggtattgacaatgacaaagttcgtcttaaaggaccactcgatcaatgttggtgtccttctctatatgctgaagtttcatcaaagattaaa |
5318649 |
T |
|
| Q |
501 |
gcaattagtactcctatcatggtcaatgcagtgtcttcaattgttaaatcttttggagaagatccaacaaggaaagag |
578 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5318648 |
gcaattagtactcctattatggtcaatgcagtatcttcaattgttaaatctttaggagaagatccaacaaggaaagag |
5318571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 3637696 - 3637476
Alignment:
| Q |
3 |
ggtcatggaggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttaccatttcaagtcaagtgtcatg |
102 |
Q |
| |
|
||||||| ||||| | ||| |||||||||||||| |||| ||||||||||| || || ||||| ||||| ||| |||| || |||||||| ||||||| |
|
|
| T |
3637696 |
ggtcatgctggtggtgcaggcggacttgtgattgtccgagacattgacctctattcctactgtgaatcttgtttgctacctttccaagtcaaatgtcatg |
3637597 |
T |
|
| Q |
103 |
taggttatatcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgacttcaagagcctcaacgtttagc |
202 |
Q |
| |
|
| ||||| |||||||||||||||||||||| || ||||||||||| || | || ||||||| |||||| |||||||||||||||||||| ||| | || |
|
|
| T |
3637596 |
tcggttacgtcccttctggccaaagagttgttggattaagcaagctctctcgtgtcgccgaagtatttgctaaacgacttcaagagcctcagcgtctggc |
3637497 |
T |
|
| Q |
203 |
agatgaaatatgttctgcttt |
223 |
Q |
| |
|
||| ||| | ||||| ||||| |
|
|
| T |
3637496 |
agacgaagtgtgttcagcttt |
3637476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 19100555 - 19100822
Alignment:
| Q |
12 |
ggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttaccatttcaagtcaagtgtcatgtaggttata |
111 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| | | || ||||| ||||| ||| || | ||||| || |||||||||||||| ||||| |
|
|
| T |
19100555 |
ggtggagcaggtggacttgtgattgttagagatattgacttgttttcctattgcgagtcatgcatgcttccattccaggtcaagtgtcatgtcggttacg |
19100654 |
T |
|
| Q |
112 |
tcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgacttcaagagcctcaacgtttagcagatgaaat |
211 |
Q |
| |
|
| || || | |||||||||| || |||||||| || | | ||||| || | ||||||||| || |||||||||||||| ||| | ||| ||||| | |
|
|
| T |
19100655 |
ttccctccagtgaaagagttgttggtttaagcaaactctcccgtgttgctgatgtatttgcaaagcggcttcaagagcctcagcgtcttgcaaatgaagt |
19100754 |
T |
|
| Q |
212 |
atgttctgctttgcatcaagggatagagccagaaggtgttgctattgtactacaatgcacacatatcc |
279 |
Q |
| |
|
||||||||| ||||||| || ||| ||||||| |||||||| || |||| ||||| ||||| |||| |
|
|
| T |
19100755 |
ttgttctgctctgcatcatggaataaagccagatggtgttgccatcatacttcaatgtacacacatcc |
19100822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 21961060 - 21961312
Alignment:
| Q |
1 |
ttggtcatggaggtggagtaggtggacttgtgattgtgagagatattgacctctactcttattgtgagtcttgcttgttaccatttcaagtcaagtgtca |
100 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| |||||| ||||| | | || ||||| |||||||| || | |||||||| ||||||||||| |
|
|
| T |
21961060 |
ttggtcatgctggtggagcaggtggacttgttattgccagagatcttgacttgttttcctattgcaagtcttgcgtgctcccatttcaggtcaagtgtca |
21961159 |
T |
|
| Q |
101 |
tgtaggttatatcccttctggccaaagagttgtaggcttaagcaagcttcctagggttgccgaagcatttgcaaaacgacttcaagagcctcaacgttta |
200 |
Q |
| |
|
||| ||||| | || ||||| |||||||| | || |||||||| || | | |||| || || ||||||| |||||||||||||||| ||| | |
|
|
| T |
21961160 |
tgttggttacgttccctctggtgaaagagttatcggtttaagcaaactctcccgtgttgtggatatatctgcaaaatgacttcaagagcctcagcgtctc |
21961259 |
T |
|
| Q |
201 |
gcagatgaaatatgttctgctttgcatcaagggatagagccagaaggtgttgc |
253 |
Q |
| |
|
||| ||||| | |||| ||||| |||||| || ||| |||||| || |||||| |
|
|
| T |
21961260 |
gcaaatgaagtttgttatgcttcgcatcacggaataaagccagcagatgttgc |
21961312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University