View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_7 (Length: 583)
Name: NF14723_low_7
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 81 - 566
Target Start/End: Complemental strand, 44734521 - 44734041
Alignment:
| Q |
81 |
ccatttaggaataaaatagatccctctcaatgtaaatgtgttaaaaggatagaaagaaagaatatgctaggtggggtcattcattactcattagtccnnn |
180 |
Q |
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| T |
44734521 |
ccatttaggaataaaatagatccctctcaatgtaaatgtgttaaaaggatagaaagaaagaatatgctaggtggggtcatt----actcattagtccttt |
44734426 |
T |
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| Q |
181 |
nnnnnnnnngtgtgaaaagggtccttaagtcgtttgtgatggctttaaatagcagtggcattcccgcgacaacaacagtaccttgaacacaaacaaaaac |
280 |
Q |
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| T |
44734425 |
tttgtttttgtgtgaaaagggtccttaagtcgtttgtgatgactttaaatagcagtggcattcccgcgacaacaacagaaccttgaacacaaacaaaaac |
44734326 |
T |
|
| Q |
281 |
caaaagaaagagaaccaaattaaccttgttgtgt--cagttgaattttcaagtgttttaactaacttagtagtttgatttgatcatcaattagccaaaac |
378 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44734325 |
caaaagaaagagaaccaaattaaccttgttgtgtgtcagttgagttttcaagtgttttaactaacttagt---ttgatttgatcatcaattagccaaaac |
44734229 |
T |
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| Q |
379 |
gggtcttccactgtggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctccttgcctttctcttccaccagggggtgttggatgag |
478 |
Q |
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| T |
44734228 |
gggtcttccactttggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctccttgcctttctcttccaccagggggtgttggatgag |
44734129 |
T |
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| Q |
479 |
caatttttgcagcttcaacagcttcaagatcatacctcccctaacttcgtctccgaagttgtcaacatttattttcatgagtctgaaa |
566 |
Q |
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| T |
44734128 |
caatttttgcagcttcaacagcttcaagatcacacctcccctaacttcgtatccgaagttgtcaacatttattttcatgagtctgaaa |
44734041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 2259650 - 2259724
Alignment:
| Q |
370 |
agccaaaacgggtcttccactgtggatgcttggtttgggtgcggacctcttgtgggccgacatgaatcgtctcct |
444 |
Q |
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| T |
2259650 |
agccaaaacgggtctccctctttggttgcttggattgggtccggacctcttgtgggccgacatgaaccgcctcct |
2259724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 552
Target Start/End: Original strand, 2259944 - 2260026
Alignment:
| Q |
470 |
ttggatgagcaatttttgcagcttcaacagcttcaagatcatacctcccctaacttcgtctccgaagttgtcaacatttattt |
552 |
Q |
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| T |
2259944 |
ttggatgagcaattcttgcagctccagcagctacaagatgaaacctcaccaaactttgtctatgaggttgtcaacatttattt |
2260026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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