View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_8 (Length: 478)
Name: NF14723_low_8
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 7289730 - 7289268
Alignment:
| Q |
1 |
tttctaaagaacaataactcatcatttcttcaatgccaattgatctacattcttgtttgaacaatatccttattctttccatgatcttcaaccatcttca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7289730 |
tttctaaagaacaataactcatcatttcttcaatgccaattgatctacattcttgtttgaacactatccttattctttccatgatcttcaaccatcttca |
7289631 |
T |
|
| Q |
101 |
aactacactcaaaagtagagacttcacaaggaatcctcaaaacaccagcttgttgaaacccaaattcttcatcagcttctctcaaaagaatctgaaaagc |
200 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7289630 |
aaatacactcaaaagtagagacttcacaaagaatcctcaaaacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagc |
7289531 |
T |
|
| Q |
201 |
ttgatgacccaaatattcagttggtggtatgatgaacctcttaagttcttctccaatataaacagctgaatacccttttaggacataaccattgttcttt |
300 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
7289530 |
ttgatgacacaaatattcagttggtggtatgatgaacctcttaagttcttctccaatacaaacagctaaatacccttttaggacataaccattgttcttt |
7289431 |
T |
|
| Q |
301 |
gatgatgttattcctccttcacgttcagatagagaaagtgttccttttagaaacttcatgattttgcttttattgatggtgttggtgttggtttaatttg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7289430 |
gatgatgttattcctccttcacgttcagatagagaaagtgttctttttagaaacttcatgattttgcttttattgatggtgttggtgttggtttaatttg |
7289331 |
T |
|
| Q |
401 |
tataagttttctatttttcttcatttctaaggatttgttgaagtccaacgatttctctaattt |
463 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7289330 |
tataagttttctattttttttcatttctaaggatttgttgaagtctaacgatttctctaattt |
7289268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 1196850 - 1197314
Alignment:
| Q |
1 |
tttctaaagaacaataactcatcatttcttcaatgccaattgatctacattcttg-tttgaacaata-tccttattctttccatgatcttcaaccatctt |
98 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||| |
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| T |
1196850 |
tttctaaagaacaataacccatcatctcttcaatgctaattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatctt |
1196949 |
T |
|
| Q |
99 |
caaactacactcaaaagtagagacttcacaaggaatcctcaaaacaccagcttgttgaaacccaaattcttcatcagcttctctcaaaagaatctgaaaa |
198 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1196950 |
caaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaa |
1197049 |
T |
|
| Q |
199 |
gcttgatgacccaaatattcagttggtggtatgatgaacctcttaagttcttctccaatataaacagctgaatacccttttaggacataaccattgttct |
298 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||| |||| |||||| | ||| |||||||||| | |
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| T |
1197050 |
gcttgatgacccaaatattcagt---tggtatgatgaacctcttaagctcttctccaacacaaacagctaaatatccttttggaacagaaccattgttgt |
1197146 |
T |
|
| Q |
299 |
ttgatgatgttattcctccttcacgttcagatagagaaagtgttccttttagaaacttcatgattttgcttttattgatggtgttggtgttgg-tttaat |
397 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| || |||||||| ||||||||| | | | |
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|
| T |
1197147 |
ttgatgatgttgttcctccttcacgttcagaaagagaaagtgttctttttagaaacttcatgcttttgcttctagtgatggtggtggtgttggctgtggt |
1197246 |
T |
|
| Q |
398 |
ttgt-ataagttttctatttttcttcatttc-taaggatttgttgaagtccaacgatttctctaattt |
463 |
Q |
| |
|
|| | || ||||| |||||||||| |||||| ||||||| |||||||||| ||| ||||||||||||| |
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|
| T |
1197247 |
ttttgatgagtttgctatttttctccatttcttaaggatctgttgaagtctaacaatttctctaattt |
1197314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 50471318 - 50471179
Alignment:
| Q |
86 |
cttcaaccatcttcaaactacactcaaaagtagagacttcacaaggaatcctcaaaacaccagcttgttgaaacccaaattcttcatcagcttctctcaa |
185 |
Q |
| |
|
|||||||||||||||| ||| |||||| || |||||||||||||| |||| |||||||| ||||| ||||||||||||||| ||||||||||| | |
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| T |
50471318 |
cttcaaccatcttcaagatactctcaaacactgaaacttcacaaggaattctcagaacaccagtttgttcaaacccaaattcttcttcagcttctctgag |
50471219 |
T |
|
| Q |
186 |
aagaatctgaaaagcttgatgacccaaatattcagttggt |
225 |
Q |
| |
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| || ||||| ||||||||| ||||||| || |||||| |
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| T |
50471218 |
taatatatgaaaggcttgatgagccaaatactcggttggt |
50471179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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