View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14723_low_9 (Length: 472)
Name: NF14723_low_9
Description: NF14723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14723_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 182 - 442
Target Start/End: Complemental strand, 28536317 - 28536057
Alignment:
| Q |
182 |
tatcctcgtgttaaattacaattgagagaatgcattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
281 |
Q |
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| T |
28536317 |
tatcctcgtgttaaattacaattgagagaatccattcccccacattttgcacctatgtggctgctttaatcttcaaaactacatttatttctttatggta |
28536218 |
T |
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| Q |
282 |
tgttcggttagtagtctagcatgtatttgcaaggtagctgcctggtctagtacagatgttcaatatatactctctgttaagtcctagacattgtttggat |
381 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536217 |
tgttcggttagtagtctaacatgtatttgcaaggtagctgcctggtctagtacagctgttcaatatatactctctgttaagtcctagacattgtttggat |
28536118 |
T |
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| Q |
382 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
442 |
Q |
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| T |
28536117 |
agaatcttatttgcctgaccacaattctgttgctgttatagactgcaatgttttaatgtgt |
28536057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 45 - 182
Target Start/End: Complemental strand, 28536517 - 28536380
Alignment:
| Q |
45 |
aaccacacattatcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactgatgaaatggattcactcatgtgtaatttacac |
144 |
Q |
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| T |
28536517 |
aaccacacattatcatactctcgagtctggtttttggttttgaaatttcagagcattactttatactgatgaaatgaattcactcatgtgtaatttacac |
28536418 |
T |
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| Q |
145 |
atgagaaggtaaagtgtcatctttcaccattcatgaat |
182 |
Q |
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| T |
28536417 |
atgagaaggtaaagtgtcatctttcaccattcatgaat |
28536380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 54492156 - 54492190
Alignment:
| Q |
127 |
ctcatgtgtaatttacacatgagaaggtaaagtgt |
161 |
Q |
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| T |
54492156 |
ctcatgtgtaattttcacatgagaaggtaaagtgt |
54492190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 17429155 - 17429217
Alignment:
| Q |
115 |
gaaatggattcactcatgtgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
177 |
Q |
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| T |
17429155 |
gaaatggattctctcatgtgtaatttactcatgagatactaaagtgtgatctcttaccattca |
17429217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 42971534 - 42971584
Alignment:
| Q |
127 |
ctcatgtgtaatttacacatgaga-aggtaaagtgtcatctttcaccattc |
176 |
Q |
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| T |
42971534 |
ctcatgtgtaatttttacatgagagaggtaaagtgtcatctctcaccattc |
42971584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 49655326 - 49655370
Alignment:
| Q |
133 |
tgtaatttacacatgagaaggtaaagtgtcatctttcaccattca |
177 |
Q |
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| T |
49655326 |
tgtaatttacacataagagagtaaagtgtcatctctcaccattca |
49655370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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