View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14724_high_2 (Length: 312)
Name: NF14724_high_2
Description: NF14724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14724_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 12998282 - 12998588
Alignment:
| Q |
14 |
tcaaggtatctatctatagataattatagtagcatgttaaatcaagaagttgtttgtggattggaattagatgtctgtcaattcgatgtgaaagagttaa |
113 |
Q |
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| T |
12998282 |
tcaaggtatctatctatagataattatagtagcatgttaaatcaagaagttgtttgtggattggaattagatgtctgtcaattcgatgtgaaagagttaa |
12998381 |
T |
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| Q |
114 |
taggtttgtagggacagtgaaagataataactatatgatcttggattcaaaactctcnnnnnnnctaacattaatatttgtccatacaaaaaagttgata |
213 |
Q |
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| T |
12998382 |
taggtttgtagggacattgaaagataataactatatgatcttggattcaaaactctc-aaaaaactaacattaatatttgtccatacaaaaaagttgata |
12998480 |
T |
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| Q |
214 |
gattcacacgtag--------nnnnnnnnnnaatttgaataaatttacgtag-nnnnnnnatatagatttgtagtataagcatgcgaaaaatatgagtat |
304 |
Q |
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|||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
12998481 |
gattcagacgtagtgttttttttttttttttaatttgaataaatttacgttgttttttttatatagatttgtagtataagcatgcgaaaaatatgagtat |
12998580 |
T |
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| Q |
305 |
atataatc |
312 |
Q |
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| T |
12998581 |
atataatc |
12998588 |
T |
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