View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14724_high_7 (Length: 226)
Name: NF14724_high_7
Description: NF14724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14724_high_7 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0213 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 16649694 - 16649471
Alignment:
| Q |
1 |
cttgaaaatttatgaaatgagaattgaacattgggaaagagagtttgatatttctttcannnnnnnnnatcaattcttatgaatagctaaacccttttgg |
100 |
Q |
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| T |
16649694 |
cttgaaaatttatgaaatgagaatcgaatattgggaaagagagtttgatatttctttcattttttt--atcaattcttatgaatagctaaacccttttgg |
16649597 |
T |
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| Q |
101 |
ctaagattaagatgaacatcttttgatatatttttaattaaattctcatattattcatgtcattgaaactgtaacaccttgatttttattattagttcat |
200 |
Q |
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| T |
16649596 |
ctaagattaagatgaacatctttttatatatttttaattaaattctcatattattcatgtcattgaaactgtaacaccttgatttttattattagtttat |
16649497 |
T |
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| Q |
201 |
taatattattattatgtgacattagt |
226 |
Q |
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| T |
16649496 |
taatattattgttatgtgacattagt |
16649471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 24757293 - 24757197
Alignment:
| Q |
70 |
tcaattcttatgaatagctaaacccttttggctaagattaagatgaacatcttttgatatatttttaattaaattctcatattattcatgtcattga |
166 |
Q |
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| T |
24757293 |
tcaattcctatgatgatctaaacccttttggctaaggttaaaatgaaaatattttgatatatttttaattaaattctcttattatttatgccattga |
24757197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 14909414 - 14909380
Alignment:
| Q |
12 |
atgaaatgagaattgaacattgggaaagagagttt |
46 |
Q |
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| T |
14909414 |
atgaaatgagaattaaacattgggaaagagagttt |
14909380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0213 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0213
Description:
Target: scaffold0213; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 24487 - 24454
Alignment:
| Q |
180 |
tgatttttattattagttcattaatattattatt |
213 |
Q |
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| T |
24487 |
tgatttttattattagtttattaatattattatt |
24454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 20379964 - 20379927
Alignment:
| Q |
182 |
atttttattattagttcattaatattattattatgtga |
219 |
Q |
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| T |
20379964 |
atttttattaatagtttattaatattattattatgtga |
20379927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 27536 - 27492
Alignment:
| Q |
170 |
tgtaacaccttgatttttattattagttcattaatattattatta |
214 |
Q |
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| T |
27536 |
tgtaacaccctaatttttaatattagtttattaatattattatta |
27492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 9884290 - 9884250
Alignment:
| Q |
170 |
tgtaacaccttgatttttattattagttcattaatattatt |
210 |
Q |
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| T |
9884290 |
tgtaacacctcgatttttaatattagtttattaatattatt |
9884250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 10303426 - 10303382
Alignment:
| Q |
170 |
tgtaacaccttgatttttattattagttcattaatattattatta |
214 |
Q |
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||||||||| |||||||| |||||||| |||||||||||||||| |
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| T |
10303426 |
tgtaacaccccgatttttaatattagtttattaatattattatta |
10303382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 23631654 - 23631694
Alignment:
| Q |
170 |
tgtaacaccttgatttttattattagttcattaatattatt |
210 |
Q |
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||||||||| |||||||| ||||||||||||||||||||| |
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| T |
23631654 |
tgtaacaccccgatttttaatattagttcattaatattatt |
23631694 |
T |
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