View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14724_low_1 (Length: 454)
Name: NF14724_low_1
Description: NF14724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14724_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 83 - 432
Target Start/End: Original strand, 2847230 - 2847579
Alignment:
| Q |
83 |
gaaacatcaacacacaattcacatcatatgtaccatctttggcccgaatttctgcatgctcaataaatgtacaagattacatacggagacaatctaaata |
182 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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|
| T |
2847230 |
gaaacatcaacacacaattcacagcatatgtaccatctttggcccgaatttctgcatgctcaataaatgtacaagattagatatggagacaatctaaata |
2847329 |
T |
|
| Q |
183 |
aaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggagagtttccttctgcatgcaagtttccagttcgcagccaac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
2847330 |
aaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggagagtttccttctgcatgcaagtttccggttcgcagccaac |
2847429 |
T |
|
| Q |
283 |
gttttagtgtctatgcgctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgnnnnnnnnnnnnnnnnnnnaacaaaagatgtgattt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2847430 |
gttttagtgtctatgcgctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgattattattattattattaaacaaaagatgtgattt |
2847529 |
T |
|
| Q |
383 |
tctataagatgggagacagcagccataccttcaaatatttatttgaccgt |
432 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
2847530 |
tctataagatgggagacagcagccatgccttaaaatatttatttgcccgt |
2847579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 2873977 - 2874309
Alignment:
| Q |
14 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagnnnnnnngaaacatcaacacacaattcacatcatatgt |
113 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
2873977 |
agaaaatactataaactgacaagtctaagttactctagaaacatcaacacatttgcgtcaagaaaaaaagaaacatcaacacacaattcacagcatatgt |
2874076 |
T |
|
| Q |
114 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagattacatacggagacaatctaaataaaccatccattttttgacttcaacttgacat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2874077 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagaatacatacggagacaatctaaataaaccatccattttttgacttcaacttaacat |
2874176 |
T |
|
| Q |
214 |
catatgcaaatgccaggacaattcttggagagtttccttctgcatgcaagtttccagttcgcagccaacgttttagtgtctatgcgctttaagttgagat |
313 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2874177 |
catatgcacatgccaggacaattcttggagagtttcctcctgcttgcaagtctccgtttcgcagccaacgttttagtgtctatgcgctttaagttgagat |
2874276 |
T |
|
| Q |
314 |
cctgcttgttcgtcgtgtaaaacaaagttactg |
346 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
2874277 |
cctgcatgttcgtcgtgtaaaacaaagttactg |
2874309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 83 - 446
Target Start/End: Complemental strand, 3160966 - 3160603
Alignment:
| Q |
83 |
gaaacatcaacacacaattcacatcatatgtaccatctttggcccgaatttctgcatgctcaataaatgtacaagattacatacggagacaatctaaata |
182 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
3160966 |
gaaacatcaacacacaattcacagcatatgtaccatctttggcccgaatttctgcatgctcaataaatgtacaagattagatatggagacaatctaaata |
3160867 |
T |
|
| Q |
183 |
aaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggagagtttccttctgcatgcaagtttccagttcgcagccaac |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
3160866 |
aaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggagagtttcctcctgcatgcaagtttccggttcgcagccaac |
3160767 |
T |
|
| Q |
283 |
gttttagtgtctatgcgctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgnnnnnnnnnnnnnnnnnnnaacaaaagatgtgattt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3160766 |
gttttagtgtctatgcgctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgattattattattattattaaacaaaagatgtgattt |
3160667 |
T |
|
| Q |
383 |
tctataagatgggagacagcagccataccttcaaatatttatttgaccgtatataatctttcaa |
446 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||| | || |||||||||||| |
|
|
| T |
3160666 |
tctataagatgggagacagcagccatgccttaaaatatttatttgcctgttcataatctttcaa |
3160603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 177 - 454
Target Start/End: Original strand, 2888860 - 2889134
Alignment:
| Q |
177 |
taaataaaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggagagtttccttctgcatgcaagtttccagttcgca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||| |
|
|
| T |
2888860 |
taaataaaccatccattttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggactgtttcctcctgcatgaaagtttcctgttcgca |
2888959 |
T |
|
| Q |
277 |
gccaacgttttagtgtctatgcgctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgnnnnnnnnnnnnnnnnnnnaacaaaagatg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
2888960 |
gccaacgttttagtgtctatgcgctttaagttgagatcctgcttgttcatcgtgtaaaacaaagttactg---attattactcctattaaacaagagatg |
2889056 |
T |
|
| Q |
377 |
tgattttctataagatgggagacagcagccataccttcaaatatttatttgaccgtatataatctttcaaatccatca |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
2889057 |
tgattttctataagatgggagacagcagccataccttaaaatatttatttgcccgttcataatctttcaattccatca |
2889134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 2798117 - 2797826
Alignment:
| Q |
14 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagnnnnnnngaaacatcaacacacaattcacatcatatgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
2798117 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagaaaaaaagaaacatcaacacacaattcacagcatatgt |
2798018 |
T |
|
| Q |
114 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagattacatacggagacaatctaaataaaccatccattttttgacttcaacttgacat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2798017 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagaataaataaggagacaatctaaataaaccatccattttttgacttcaacttcacat |
2797918 |
T |
|
| Q |
214 |
catatgcaaatgccaggacaattcttggagagtttccttctgcatgcaagtttccagttcgcagccaacgttttagtgtctatgcgctttaagttga |
310 |
Q |
| |
|
|| || ||||| | |||| |||| | ||||| |||||| |||| | |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2797917 |
cacattcaaat-----aataattattggcgtctttccgcctgcatcgaagtctatggttcgcagacaacgtttcagtgtctatgcgctttaagttga |
2797826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 177 - 454
Target Start/End: Complemental strand, 3146002 - 3145728
Alignment:
| Q |
177 |
taaataaaccatccatttttt-gacttcaacttgacatcatatgcaaatgccaggacaattcttggagagtttccttctgcatgcaagtttccagttcgc |
275 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||| |
|
|
| T |
3146002 |
taaataaaccatccatttttttgacttcaacttgacatcatatgcaaatgccaggacaattcttggacggtttcctcctgcatgaaagtttccggttcgc |
3145903 |
T |
|
| Q |
276 |
agccaacgttttagtgtctatgcgctttaagttgagatcctgcttgttcgtcgtgtaaaacaaagttactgnnnnnnnnnnnnnnnnnnnaacaaaagat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||| |
|
|
| T |
3145902 |
agccaacgttttagtgtctatgcgctttaagttgagatcctgcttgttcgttgtgtaaaac-aagttactg---attattacttctattaaacaagagat |
3145807 |
T |
|
| Q |
376 |
gtgattttctataagatgggagacagcagccataccttcaaatatttatttgaccgtatataatctttcaaatccatca |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
3145806 |
gtgattttctataagatgggagacagcagccataccttaaaatatttatttgcccgttcataatctttcaattccatca |
3145728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 3146349 - 3146180
Alignment:
| Q |
14 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagnnnnnnngaaacatcaacacacaattcacatcatatgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3146349 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagaaaaaaacaaacatcaacacacaattcacatcatatgt |
3146250 |
T |
|
| Q |
114 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagattacatacggagacaatctaaataa |
183 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
3146249 |
accatctttggcccgaatttctccatgctcaataaatgtacaagattagatgcggagacaatttaaataa |
3146180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 2888237 - 2888406
Alignment:
| Q |
14 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagnnnnnnngaaacatcaacacacaattcacatcatatgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2888237 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacacatttgcgtcaagaaaaaaacaaacatcaacacacaattcacatcatatgt |
2888336 |
T |
|
| Q |
114 |
accatctttggcccgaatttctgcatgctcaataaatgtacaagattacatacggagacaatctaaataa |
183 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||||| ||||||| |
|
|
| T |
2888337 |
accatctttggcccgaatttctccatgctcaataaatgtacaagattagatgcgaagacaatttaaataa |
2888406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 2874381 - 2874460
Alignment:
| Q |
375 |
tgtgattttctataagatgggagacagcagccataccttcaaatatttatttgaccgtatataatctttcaaatccatca |
454 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
2874381 |
tgtgattttctataagatgggagacaacagacataccttcaaatatttatttgaccgttcataatctttcaattccatca |
2874460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 446
Target Start/End: Complemental strand, 2797749 - 2797669
Alignment:
| Q |
366 |
aacaaaagatgtgattttctataagatgggagacagcagccataccttcaaatatttatttgaccgtatataatctttcaa |
446 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
2797749 |
aacaagaggtgtgattttctataagatgggagacagcagacataccttaaaatatttatttgcccgttcataatctttcaa |
2797669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 3161003 - 3160953
Alignment:
| Q |
14 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacaca |
64 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3161003 |
agaaaatactataaactcacaagtctaagttactctagaaacatcaacaca |
3160953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 2847193 - 2847243
Alignment:
| Q |
14 |
agaaaatactataaactcacaagtccaagttactctagaaacatcaacaca |
64 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2847193 |
agaaaatactataaactcacatgtctaagttactctagaaacatcaacaca |
2847243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 413
Target Start/End: Original strand, 2881897 - 2881933
Alignment:
| Q |
377 |
tgattttctataagatgggagacagcagccatacctt |
413 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2881897 |
tgattttctataagatgggagacgacagccatacctt |
2881933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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