View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14724_low_11 (Length: 201)
Name: NF14724_low_11
Description: NF14724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14724_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 3915723 - 3915585
Alignment:
| Q |
38 |
ttctgcacttacatatgtgaagtgtagtcaaggaatggatctaagagaaggacagttgatcaatttaaattccttaagaatgggtaatccatctagcaaa |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3915723 |
ttctgcacttacatatgtgaagtgtagtcaaggaatggatctaagagaaggacagttgatcaatttaaattccttaagaatgggtaatccatctagcaaa |
3915624 |
T |
|
| Q |
138 |
tcatctggaagtacaaccaatgattcacatccctcaatt |
176 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
3915623 |
tcatctggatggacaaccaatgattcacatccctcaatt |
3915585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 31683363 - 31683430
Alignment:
| Q |
96 |
atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc |
163 |
Q |
| |
|
|||||||| ||||| |||||| ||| | |||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
31683363 |
atcaatttcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattc |
31683430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 52652242 - 52652294
Alignment:
| Q |
111 |
ttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc |
163 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
52652242 |
ttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattc |
52652294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 31895069 - 31895002
Alignment:
| Q |
96 |
atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc |
163 |
Q |
| |
|
|||||||| ||||| |||||| ||| | |||||||||||||| ||||||| || ||| |||||||||| |
|
|
| T |
31895069 |
atcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattc |
31895002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 31899653 - 31899586
Alignment:
| Q |
96 |
atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc |
163 |
Q |
| |
|
|||||||| ||||| |||||| ||| | |||||||||||||| ||||||| || ||| |||||||||| |
|
|
| T |
31899653 |
atcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattc |
31899586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 31915362 - 31915295
Alignment:
| Q |
96 |
atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc |
163 |
Q |
| |
|
|||||||| ||||| |||||| ||| | |||||||||||||| ||||||| || ||| |||||||||| |
|
|
| T |
31915362 |
atcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattc |
31915295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 31949010 - 31948943
Alignment:
| Q |
96 |
atcaatttaaattccttaagaatgggtaatccatctagcaaatcatctggaagtacaaccaatgattc |
163 |
Q |
| |
|
|||||||| ||||| |||||| ||| | |||||||||||||| ||||||| || ||| |||||||||| |
|
|
| T |
31949010 |
atcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattc |
31948943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University