View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14724_low_2 (Length: 423)

Name: NF14724_low_2
Description: NF14724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14724_low_2
NF14724_low_2
[»] chr3 (14 HSPs)
chr3 (26-416)||(5885304-5885691)
chr3 (200-408)||(54946321-54946528)
chr3 (43-203)||(54946605-54946765)
chr3 (19-89)||(54949211-54949281)
chr3 (22-89)||(3744454-3744521)
chr3 (19-89)||(10179366-10179436)
chr3 (19-97)||(39822090-39822167)
chr3 (19-97)||(34209867-34209945)
chr3 (19-89)||(52349554-52349623)
chr3 (22-83)||(26215155-26215216)
chr3 (19-56)||(33519240-33519277)
chr3 (26-89)||(26297665-26297728)
chr3 (19-56)||(346604-346641)
chr3 (24-89)||(50516103-50516168)
[»] scaffold0713 (1 HSPs)
scaffold0713 (22-268)||(7364-7610)
[»] chr6 (7 HSPs)
chr6 (200-416)||(16856177-16856393)
chr6 (24-203)||(16855922-16856101)
chr6 (19-74)||(8643580-8643635)
chr6 (24-89)||(16853425-16853490)
chr6 (24-89)||(18877365-18877430)
chr6 (19-89)||(13433698-13433767)
chr6 (19-63)||(32545589-32545633)
[»] chr7 (8 HSPs)
chr7 (200-408)||(47933519-47933726)
chr7 (43-203)||(47933803-47933963)
chr7 (19-89)||(47936410-47936480)
chr7 (19-73)||(39073319-39073373)
chr7 (22-89)||(39063934-39064001)
chr7 (19-89)||(25419808-25419877)
chr7 (19-51)||(5768348-5768380)
chr7 (24-89)||(39067115-39067180)
[»] scaffold0182 (2 HSPs)
scaffold0182 (200-388)||(11129-11317)
scaffold0182 (22-204)||(11399-11587)
[»] chr4 (12 HSPs)
chr4 (202-416)||(43942417-43942633)
chr4 (19-205)||(43942124-43942310)
chr4 (268-416)||(2501214-2501361)
chr4 (26-185)||(2501722-2501884)
chr4 (24-89)||(51868294-51868359)
chr4 (19-89)||(34738002-34738072)
chr4 (19-51)||(26376844-26376876)
chr4 (28-72)||(26382345-26382389)
chr4 (22-89)||(2505234-2505300)
chr4 (19-89)||(21802765-21802835)
chr4 (29-89)||(27256579-27256639)
chr4 (19-63)||(31555393-31555437)
[»] chr2 (11 HSPs)
chr2 (268-353)||(26231047-26231132)
chr2 (19-73)||(37777730-37777784)
chr2 (22-90)||(3245036-3245103)
chr2 (19-73)||(22990028-22990082)
chr2 (19-89)||(7574336-7574405)
chr2 (19-89)||(16668919-16668988)
chr2 (31-73)||(22989171-22989213)
chr2 (19-89)||(37904078-37904148)
chr2 (365-408)||(26230961-26231004)
chr2 (19-74)||(40652776-40652831)
chr2 (22-89)||(29455077-29455144)
[»] chr5 (4 HSPs)
chr5 (19-87)||(10180435-10180503)
chr5 (22-89)||(37302191-37302258)
chr5 (19-53)||(11381254-11381288)
chr5 (28-72)||(11386776-11386820)
[»] scaffold0316 (2 HSPs)
scaffold0316 (19-87)||(5480-5548)
scaffold0316 (19-97)||(5380-5457)
[»] chr8 (7 HSPs)
chr8 (19-63)||(21566224-21566268)
chr8 (22-73)||(32207843-32207894)
chr8 (19-89)||(10186223-10186293)
chr8 (19-69)||(11428342-11428392)
chr8 (19-89)||(14597490-14597560)
chr8 (25-89)||(32663981-32664045)
chr8 (19-89)||(4138186-4138256)
[»] chr1 (5 HSPs)
chr1 (21-64)||(22909502-22909545)
chr1 (19-89)||(13786057-13786126)
chr1 (22-89)||(25808017-25808083)
chr1 (22-73)||(39621645-39621696)
chr1 (27-73)||(42329357-42329403)
[»] scaffold0564 (1 HSPs)
scaffold0564 (19-97)||(1848-1926)
[»] scaffold0045 (1 HSPs)
scaffold0045 (19-53)||(1389-1423)
[»] scaffold0098 (1 HSPs)
scaffold0098 (26-72)||(46074-46120)
[»] scaffold0061 (1 HSPs)
scaffold0061 (19-74)||(50602-50658)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-74)||(147976-148032)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 26 - 416
Target Start/End: Complemental strand, 5885691 - 5885304
Alignment:
Q  26 tatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5885691 tatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcctctttctaacttttattcttgatcattctactactttgcttatgtgt 5885592  T
Q  126 cactccttcaagccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttat 225  Q
    ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885591 cact---tcaagccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaacttttacatccttcattcttat 5885495  T
Q  226 aaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgtctgtttacattcttccacataaaggt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5885494 aaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgtctgtttacattcttccacataaaggt 5885395  T
Q  326 taaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatctcattccttctctgctc 416  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5885394 taaaaagatgttacattttagctcatccatatttccctttttccctttcacctatatgataaccaacgcaaatctcattccttttctgctc 5885304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 200 - 408
Target Start/End: Complemental strand, 54946528 - 54946321
Alignment:
Q  200 agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt 299  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  54946528 agaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgattatttgtt-taatatttacaccatcaccattgaatttgt 54946430  T
Q  300 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  54946429 ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc 54946330  T
Q  400 tcattcctt 408  Q
    |||||||||    
T  54946329 tcattcctt 54946321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 54946765 - 54946605
Alignment:
Q  43 ctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  54946765 ctacattttgcttacatgtcacttcaccaatgatcccctttctaaattttattcttgatcattctactactttgcttatgtgtcactccttcaaaccatt 54946666  T
Q  143 atacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaa 203  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54946665 atacataataattttgataaaaagagttatactaatcaattgcaatcttaataagaaagaa 54946605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 54949281 - 54949211
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||||||  ||||||||  |||||||||||||    
T  54949281 atctatatatacatgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaact 54949211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 3744521 - 3744454
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||||||||||||| ||||||||  |||||| ||||||||  |||||| |||||||    
T  3744521 tatatatacatgtattctaacctacactttgcttatgtgtcacctcaccaattctcccctctctaact 3744454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 10179436 - 10179366
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||  ||||||||  ||| |||||||||    
T  10179436 atctctatatacatgtattctaaactacactttgcttacatgtcaccacaccaatgcccccttttctaact 10179366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 39822167 - 39822090
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattct 97  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||  |||| ||||  ||| |||||||||| ||||||    
T  39822167 atctatatatacatgtattctaagctacactttgcttacatgtcatctcacaaatg-ccccttttctaacttatattct 39822090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 34209867 - 34209945
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattct 97  Q
    |||| ||||||||||||||||||  |||| |||||||||||||||  |||| ||||  ||| |||||||||| ||||||    
T  34209867 atctctatatacatgtattctaaattacactttgcttacatgtcatctcacaaatgcccccttttctaacttatattct 34209945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 52349554 - 52349623
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||||||||||||| | ||  |||||| |||||||  ||||| |||||||||    
T  52349554 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa-catcccttttctaact 52349623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 26215155 - 26215216
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatccccttt 83  Q
    |||||||||||||||||||| ||||||||| ||||  ||| |||||||||||| | ||||||    
T  26215155 tatatatacatgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttt 26215216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 33519277 - 33519240
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgctta 56  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33519277 atctatatatacatgtattctaacctacatattgctta 33519240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 26297728 - 26297665
Alignment:
Q  26 tatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||| ||||| ||||||||  ||| || ||||||||  ||||||||||||||    
T  26297728 tatacatgtattctaaactacactttgcttatgtgttacctcaccaattttcccctttctaact 26297665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 346604 - 346641
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgctta 56  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  346604 atctctatatacatgtattctaaactacattttgctta 346641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 50516168 - 50516103
Alignment:
Q  24 tatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||  |||| |||||||||||| ||  |||||||||  || ||||||||||    
T  50516168 tatatacatgtattctaagatacactttgcttacatggcatctcaccaatgccccgctttctaact 50516103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 7364 - 7610
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttat 121  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7364 tatatatacatgtattttaagctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttat 7463  T
Q  122 gtgtcactccttcaagccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaacttttacatccttcattc 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7464 gtgtcactccttcaagccattatacataatacttttgataaaaagagttacactaatcaattgcaatcttaataagaaagaacttttacatccttcattc 7563  T
Q  222 ttataaccccttcaactactattttttaaaaacattgattatttgtt 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7564 ttataaccccttcaactactattttttaaaaacattgattatttgtt 7610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 200 - 416
Target Start/End: Original strand, 16856177 - 16856393
Alignment:
Q  200 agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16856177 agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatcgccattgaatttgt 16856276  T
Q  300 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
T  16856277 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttctctttttccctttcacctatatgataaccaacgcaaatc 16856376  T
Q  400 tcattccttctctgctc 416  Q
    ||||||||| |||||||    
T  16856377 tcattccttttctgctc 16856393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 16855922 - 16856101
Alignment:
Q  24 tatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgt 123  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16855922 tatatatatatattctaaactacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgt 16856021  T
Q  124 gtcactccttcaagccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaa 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16856022 gtcactccttcaaaccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaa 16856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 8643635 - 8643580
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatg 74  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  8643635 atctatatatacatgtattctaagctacattttgcttacatgtcacctcacaaatg 8643580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 16853425 - 16853490
Alignment:
Q  24 tatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||||| ||||| ||||||||||||||||  |||||||| |||  |||||||||    
T  16853425 tatatacatgtattctaaactacactttgcttacatgtcaccacaccaatgctccattttctaact 16853490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 18877365 - 18877430
Alignment:
Q  24 tatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||||||||||||||||||||  |||||| | |||||||   ||||||||||||    
T  18877365 tatatacatgtattctaacctacattttgcttaggtgtcaccttaccaatgcctccctttctaact 18877430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 13433767 - 13433698
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||||||||||||| | ||  |||||| |||||||  ||||| |||||||||    
T  13433767 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa-catcccttttctaact 13433698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 32545589 - 32545633
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtca 63  Q
    |||| |||||||||||||| ||| ||||| |||||||||||||||    
T  32545589 atctctatatacatgtattttaaactacactttgcttacatgtca 32545633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 200 - 408
Target Start/End: Complemental strand, 47933726 - 47933519
Alignment:
Q  200 agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt 299  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  47933726 agaacttttacatccttcgttcttataaccccttcaactactattttttaaaaacattgattatttgtt-taatatttacaccatcaccattgaatttgt 47933628  T
Q  300 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatc 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  47933627 ctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcacctatatgataaccaacgcaaatc 47933528  T
Q  400 tcattcctt 408  Q
    |||||||||    
T  47933527 tcattcctt 47933519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 47933963 - 47933803
Alignment:
Q  43 ctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttatgtgtcactccttcaagccatt 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47933963 ctacattttgcttacatgtcacttcaccaatgatcccctttctaaattttattcttgatcattctactactttgcttatgtgtcactccttcaaaccatt 47933864  T
Q  143 atacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaa 203  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47933863 atacataataattttgataaaaagagttatactaatcaattgcaatcttaataagaaagaa 47933803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 47936480 - 47936410
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||||||  ||||||||  |||||||||||||    
T  47936480 atctatatatacatgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaact 47936410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 39073373 - 39073319
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaat 73  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||    
T  39073373 atctatatatacatgtattctaacctacactttgcttatgtgtcacctcaccaat 39073319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 39064001 - 39063934
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||||||||||||||||||||||  |||||  | |||||||   ||||||||||||    
T  39064001 tatatatacatgtattctaacctacattttgcttatgtgtcatcttaccaatgcctccctttctaact 39063934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 25419877 - 25419808
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||||||||||||| | ||  |||||| |||||||  ||||| |||||||||    
T  25419877 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa-catcccttttctaact 25419808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 5768380 - 5768348
Alignment:
Q  19 atctatatatacatgtattctaacctacatttt 51  Q
    |||||||||||||||||||||||||||||||||    
T  5768380 atctatatatacatgtattctaacctacatttt 5768348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 39067180 - 39067115
Alignment:
Q  24 tatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||||||||||||||| | ||  |||||| |||||||    |||||||||||||    
T  39067180 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccccctttctaact 39067115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 200 - 388
Target Start/End: Complemental strand, 11317 - 11129
Alignment:
Q  200 agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatctccattgaatttgt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11317 agaacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttataatatttacaccatcaccattgaatttgt 11218  T
Q  300 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataac 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  11217 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctatatgataac 11129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 11587 - 11399
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgcttat 121  Q
    |||||||| ||||||||||| |||||||||| ||||||||||| |||||||||| || |||| ||||||||||||||||||||||| |||||||||||||    
T  11587 tatatatatatgtattctaagctacattttgattacatgtcacctcaccaatgaccctctttttaacttttattcttgatcattcttctactttgcttat 11488  T
Q  122 gtgtcactccttcaagccattatacataataattttgata------aaaagagttacactaatcaattgcaatcttaataagaaagaac 204  Q
    |||||||| | |||| ||||||||||| ||| ||||||||      |||||||||||| ||||||||||||||||||||||||||||||    
T  11487 gtgtcacttcctcaatccattatacatcatagttttgataaaaataaaaagagttacaataatcaattgcaatcttaataagaaagaac 11399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 202 - 416
Target Start/End: Original strand, 43942417 - 43942633
Alignment:
Q  202 aacttttacatccttcattcttataaccccttcaactactattttttaaaaacattgattatttgttata--atatttacaccatctccattgaatttgt 299  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  43942417 aacttttacatccttcattcttataactccttcaactactattttttaaaaacattgattatttgttatataatatttacaccatcaccattgaatttgt 43942516  T
Q  300 ctgtttacattcttccacataaaggttaaaaagatgttacattttagctcattcatattttcctttttccctttcacctatatgataaccaacgcaaatc 399  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  43942517 ctgtttacattcttccatataaaggttaaaaagatgttacattttagatcatccatatttccctttttccctttcacctacatgataaccaacgcaaatc 43942616  T
Q  400 tcattccttctctgctc 416  Q
    ||||||||| |||||||    
T  43942617 tcattccttttctgctc 43942633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 43942124 - 43942310
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattcttgatcattctactactttgct 118  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  43942124 atctctatatacatgtattctaatctacattttgcttacatgtcacttcaccaatgatcccctttctaatttttattcttgatcattcttctactctgct 43942223  T
Q  119 tatgtgtcactccttcaagccattatacataataattttgataaaaagagttacactaatcaattgcaatcttaataagaaagaact 205  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43942224 tatgtgtcactccctcaaaccattatacataataattttgataaaaagagttacactaatcaattgcaaccttaataagaaagaact 43942310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 268 - 416
Target Start/End: Complemental strand, 2501361 - 2501214
Alignment:
Q  268 tataatatttacaccatctccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcattcatattttccttttt 367  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||    ||||||||||||    
T  2501361 tataatatttacaccatcatcattgaatgtgtctgtttacattctttcacataaagcttaaaaagatgttacattttagatcatcttaattttccttttt 2501262  T
Q  368 ccctttcacctatatgataaccaacgcaaatctcattccttctctgctc 416  Q
    ||||||||||||||| |||| | || | ||||||||||||| |||||||    
T  2501261 ccctttcacctatataataatc-acactaatctcattccttttctgctc 2501214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 2501884 - 2501722
Alignment:
Q  26 tatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttct---aacttttattcttgat----cattctactactttgct 118  Q
    |||||||||||| ||| |||||||||||||||||| ||  |||||||||| ||  ||| |   |||||| |||||| ||    |||||| ||||||||||    
T  2501884 tatacatgtattttaagctacattttgcttacatgacatctcaccaatgacccttttttttttaacttt-attcttaattaatcattcttctactttgct 2501786  T
Q  119 tatgtgtcactccttcaagccattatacataataattttgataaaaagagttacactaatcaattgc 185  Q
    ||||||||||||| |||| ||||||||||   ||||||||||||||||||||||||||||| |||||    
T  2501785 tatgtgtcactccctcaaaccattataca---taattttgataaaaagagttacactaatctattgc 2501722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 51868294 - 51868359
Alignment:
Q  24 tatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||| |||||||||||||  |||||| | |||||||  |||||||||||||    
T  51868294 tatatacatgtattctaacatacattttgcttatgtgtcaccttaccaatgcccccctttctaact 51868359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 34738072 - 34738002
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||| |||||||||||||||||||||||||||||| ||  |||||| | |||||||   ||||||||||||    
T  34738072 atctctatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttctaact 34738002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 26376844 - 26376876
Alignment:
Q  19 atctatatatacatgtattctaacctacatttt 51  Q
    |||||||||||||||||||||||||||||||||    
T  26376844 atctatatatacatgtattctaacctacatttt 26376876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 26382345 - 26382389
Alignment:
Q  28 tacatgtattctaacctacattttgcttacatgtcacttcaccaa 72  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||    
T  26382345 tacatgtattctaagctacattttccttacatgtcacctcaccaa 26382389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 2505300 - 2505234
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||||||||||||||||| | ||  |||||| |||||||  ||||| |||||||||    
T  2505300 tatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa-catcccttttctaact 2505234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 21802765 - 21802835
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||| |||||||||||||||||| |||||||| || ||  |||||| | |||||||  |||||||||||||    
T  21802765 atctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaact 21802835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 27256579 - 27256639
Alignment:
Q  29 acatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||| | ||  |||||| | |||||||  |||||||||||||    
T  27256579 acatgtattctaacctacatttttcctatgtgtcaccttaccaatgcccccctttctaact 27256639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 31555393 - 31555437
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtca 63  Q
    |||| |||||||||||||| ||| ||||| |||||||||||||||    
T  31555393 atctttatatacatgtattataagctacactttgcttacatgtca 31555437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 26231132 - 26231047
Alignment:
Q  268 tataatatttacaccatctccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcattc 353  Q
    |||| |||||||||||||  ||||| || ||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  26231132 tatattatttacaccatcatcattggatgtgtatgtttacattcttccacataaagcttaaagagatgttacattttagatcattc 26231047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 37777730 - 37777784
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaat 73  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  37777730 atctatatatacatgtattctaacctacactttgcttacatgtcacctcaccaat 37777784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 3245036 - 3245103
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaactt 90  Q
    |||||||||||||||||||| ||||| |||||||||||||||| |||| |||| |||| ||||||||||    
T  3245036 tatatatacatgtattctaaactacactttgcttacatgtcacctcacaaatg-tcccttttctaactt 3245103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 22990082 - 22990028
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaat 73  Q
    |||||||||||||||||||||||| |||||||||||||  |||||| ||||||||    
T  22990082 atctatatatacatgtattctaacgtacattttgcttatgtgtcacctcaccaat 22990028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 7574405 - 7574336
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||||||||||||| | ||  |||||| |||||||  ||||| |||||||||    
T  7574405 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa-catcccttttctaact 7574336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 16668988 - 16668919
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||||||||||||| | ||  |||||| |||||||  ||||| |||||||||    
T  16668988 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa-catcccttttctaact 16668919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 22989213 - 22989171
Alignment:
Q  31 atgtattctaacctacattttgcttacatgtcacttcaccaat 73  Q
    ||||||||||||||||| |||||||||||||||| ||||||||    
T  22989213 atgtattctaacctacactttgcttacatgtcacctcaccaat 22989171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 37904148 - 37904078
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||| ||||||||| | ||  |||||| |||||||||  ||||| |||||||    
T  37904148 atctatatatacatgtattctaagctacatttttcctatgtgtcacctcaccaatgcccccctctctaact 37904078  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 365 - 408
Target Start/End: Complemental strand, 26231004 - 26230961
Alignment:
Q  365 tttccctttcacctatatgataaccaacgcaaatctcattcctt 408  Q
    |||||||||||||||||| ||||||||| | |||||||||||||    
T  26231004 tttccctttcacctatataataaccaacactaatctcattcctt 26230961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 40652831 - 40652776
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatg 74  Q
    |||| |||||||||||||||||| ||||| ||| |||||||||||| |||| ||||    
T  40652831 atctctatatacatgtattctaagctacactttccttacatgtcacctcacaaatg 40652776  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 29455077 - 29455144
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatccc-ctttctaact 89  Q
    |||||||| ||||||||||| ||||||||| | ||  ||||||||||||||| ||||| ||||||||||    
T  29455077 tatatatatatgtattctaagctacatttttcctatgtgtcacttcaccaat-atccctctttctaact 29455144  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10180435 - 10180503
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaa 87  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||||||||   ||||||||||    
T  10180435 atctatatatacatgtattctaacctacattttgcttatgtgtcacctcaccaatgcctccctttctaa 10180503  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 37302258 - 37302191
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||||||||||||||||||| ||  |||||| | ||||||||   |||||||||||    
T  37302258 tatatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttctaact 37302191  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 11381254 - 11381288
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgc 53  Q
    |||||||||||||||||||||||||||||||||||    
T  11381254 atctatatatacatgtattctaacctacattttgc 11381288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 11386776 - 11386820
Alignment:
Q  28 tacatgtattctaacctacattttgcttacatgtcacttcaccaa 72  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||    
T  11386776 tacatgtattctaagctacattttccttacatgtcacctcaccaa 11386820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 5548 - 5480
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaa 87  Q
    ||||||||||||||||||||||||||||||||| | ||  |||||| | ||||||| ||||||||||||    
T  5548 atctatatatacatgtattctaacctacatttttcctatgtgtcaccttaccaatgttcccctttctaa 5480  T

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Target: scaffold0316; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 5457 - 5380
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattct 97  Q
    |||| |||||||||||||||||| ||||| |||||||||||||||  |||| ||||  ||| |||||||||| ||||||    
T  5457 atctctatatacatgtattctaaactacactttgcttacatgtcatctcacaaatg-ccccttttctaacttatattct 5380  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 21566268 - 21566224
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtca 63  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  21566268 atctatatatacatgtattctaacctacactttgcttacatgtca 21566224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 32207843 - 32207894
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaat 73  Q
    |||||| ||||||||||||||||||| |||||||||||||||| ||||||||    
T  32207843 tatatacacatgtattctaacctacactttgcttacatgtcacctcaccaat 32207894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 10186223 - 10186293
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||| |||||||| || ||  |||||| | |||||||  |||||||||||||    
T  10186223 atctatatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaact 10186293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 11428392 - 11428342
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcac 69  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||| ||||    
T  11428392 atctatatatacatgtattctaagctacattttgcttatgtgtcacctcac 11428342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 14597560 - 14597490
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||| |||||||||||||||||| ||||||||||| || ||||||| | ||||||   |||||||||||||    
T  14597560 atctctatatacatgtattctaagctacattttgcctatatgtcaccttaccaattcccccctttctaact 14597490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 32663981 - 32664045
Alignment:
Q  25 atatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||| ||||| ||||||||  |||||| ||||||||  | ||||||||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaatttttccctttctaact 32664045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 4138186 - 4138256
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||| |||||||||||||||||| |||||||| || ||  |||||| | |||||||  |||||||||||||    
T  4138186 atctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaact 4138256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 22909545 - 22909502
Alignment:
Q  21 ctatatatacatgtattctaacctacattttgcttacatgtcac 64  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  22909545 ctatatatacatgtattctaaactacactttgcttacatgtcac 22909502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 13786057 - 13786126
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    ||||||||||||||||||||||||||||||||| | ||  |||||| |||||||  ||||| |||||||||    
T  13786057 atctatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa-catcccttttctaact 13786126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 25808083 - 25808017
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaact 89  Q
    |||||||||||||||||||||||||||||| | ||  |||||| |||||||  ||||| |||||||||    
T  25808083 tatatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa-catcccttttctaact 25808017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 39621645 - 39621696
Alignment:
Q  22 tatatatacatgtattctaacctacattttgcttacatgtcacttcaccaat 73  Q
    |||||||||||||||||||| ||||| ||||||||  |||||| ||||||||    
T  39621645 tatatatacatgtattctaaactacactttgcttatgtgtcacctcaccaat 39621696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 42329357 - 42329403
Alignment:
Q  27 atacatgtattctaacctacattttgcttacatgtcacttcaccaat 73  Q
    ||||||||||||||| ||||| |||| ||||||||||| ||||||||    
T  42329357 atacatgtattctaaactacaatttgattacatgtcacctcaccaat 42329403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 1848 - 1926
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgcttacatgtcacttcaccaatgatcccctttctaacttttattct 97  Q
    |||| ||||||||| |||||||| ||||| |||||||||||||||  |||| ||||  ||| |||||||||| ||||||    
T  1848 atctctatatacatttattctaaactacactttgcttacatgtcatctcacaaatgcccccttttctaacttatattct 1926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 1423 - 1389
Alignment:
Q  19 atctatatatacatgtattctaacctacattttgc 53  Q
    |||||||||||||||||||||||||||||||||||    
T  1423 atctatatatacatgtattctaacctacattttgc 1389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 46074 - 46120
Alignment:
Q  26 tatacatgtattctaacctacattttgcttacatgtcacttcaccaa 72  Q
    |||||||||||||||| |||||||||||||| || |||| |||||||    
T  46074 tatacatgtattctaagctacattttgcttatatatcacctcaccaa 46120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 50602 - 50658
Alignment:
Q  19 atctatatatacatgtattctaacctaca-ttttgcttacatgtcacttcaccaatg 74  Q
    |||| |||||||||||||||||| ||||| |||| |||||||||||| |||| ||||    
T  50602 atctctatatacatgtattctaagctacacttttccttacatgtcacctcacaaatg 50658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 148032 - 147976
Alignment:
Q  19 atctatatatacatgtattctaacctaca-ttttgcttacatgtcacttcaccaatg 74  Q
    |||| |||||||||||||||||| ||||| |||| |||||||||||| |||| ||||    
T  148032 atctctatatacatgtattctaagctacacttttccttacatgtcacctcacaaatg 147976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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