View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14724_low_3 (Length: 421)

Name: NF14724_low_3
Description: NF14724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14724_low_3
NF14724_low_3
[»] chr5 (5 HSPs)
chr5 (13-288)||(38921455-38921729)
chr5 (22-288)||(35968502-35968757)
chr5 (290-406)||(9887895-9888011)
chr5 (153-287)||(16727813-16727947)
chr5 (153-191)||(16306739-16306777)
[»] chr4 (11 HSPs)
chr4 (13-290)||(30829925-30830200)
chr4 (13-291)||(52190144-52190433)
chr4 (161-289)||(52189185-52189313)
chr4 (153-275)||(31409326-31409445)
chr4 (202-290)||(8480923-8481011)
chr4 (17-87)||(31409574-31409643)
chr4 (205-288)||(41774644-41774727)
chr4 (202-287)||(8479652-8479738)
chr4 (245-288)||(41780271-41780314)
chr4 (207-284)||(23545329-23545406)
chr4 (91-139)||(8479843-8479891)
[»] chr7 (9 HSPs)
chr7 (13-288)||(41739622-41739896)
chr7 (205-286)||(42537718-42537799)
chr7 (206-288)||(45291932-45292014)
chr7 (231-287)||(40601826-40601882)
chr7 (206-288)||(45296057-45296139)
chr7 (206-288)||(38516620-38516702)
chr7 (236-289)||(40600710-40600763)
chr7 (154-191)||(25272069-25272106)
chr7 (220-288)||(33061554-33061622)
[»] chr1 (10 HSPs)
chr1 (38-289)||(35063434-35063684)
chr1 (153-288)||(26529508-26529643)
chr1 (161-290)||(36573960-36574089)
chr1 (154-290)||(49917387-49917522)
chr1 (184-290)||(36575494-36575600)
chr1 (201-293)||(26531064-26531156)
chr1 (202-288)||(49919676-49919762)
chr1 (245-290)||(26530500-26530545)
chr1 (184-288)||(35062564-35062668)
chr1 (245-290)||(36574954-36574999)
[»] chr8 (11 HSPs)
chr8 (13-289)||(17864490-17864777)
chr8 (163-288)||(17863466-17863591)
chr8 (154-289)||(3870767-3870902)
chr8 (153-288)||(32565560-32565695)
chr8 (156-287)||(3872215-3872346)
chr8 (217-288)||(12887715-12887786)
chr8 (207-288)||(5005708-5005789)
chr8 (154-291)||(32564504-32564641)
chr8 (245-288)||(5014842-5014885)
chr8 (203-288)||(37241028-37241113)
chr8 (222-288)||(12888239-12888305)
[»] chr2 (10 HSPs)
chr2 (153-290)||(4753526-4753663)
chr2 (161-289)||(31622039-31622167)
chr2 (161-289)||(36669089-36669217)
chr2 (152-288)||(40894796-40894932)
chr2 (227-285)||(4755036-4755094)
chr2 (163-288)||(35298556-35298681)
chr2 (205-294)||(35306087-35306176)
chr2 (208-288)||(31620525-31620605)
chr2 (184-293)||(36666196-36666306)
chr2 (245-290)||(31621130-31621175)
[»] chr3 (13 HSPs)
chr3 (206-289)||(37464967-37465050)
chr3 (151-288)||(9099560-9099697)
chr3 (153-288)||(19801786-19801919)
chr3 (164-288)||(20997633-20997757)
chr3 (153-288)||(36163383-36163518)
chr3 (154-294)||(36164503-36164643)
chr3 (153-287)||(37463680-37463814)
chr3 (201-288)||(11137912-11137999)
chr3 (86-134)||(19801947-19801995)
chr3 (38-134)||(19801947-19802032)
chr3 (220-288)||(18939847-18939915)
chr3 (257-288)||(18912548-18912579)
chr3 (161-190)||(20884324-20884353)
[»] chr6 (8 HSPs)
chr6 (154-293)||(18192932-18193071)
chr6 (154-288)||(18191746-18191880)
chr6 (206-290)||(9448745-9448829)
chr6 (153-289)||(30758798-30758934)
chr6 (154-288)||(11020315-11020449)
chr6 (236-290)||(226119-226173)
chr6 (236-288)||(227233-227285)
chr6 (153-190)||(21396392-21396429)
[»] scaffold0115 (4 HSPs)
scaffold0115 (202-288)||(6055-6141)
scaffold0115 (202-288)||(13795-13881)
scaffold0115 (202-288)||(4336-4422)
scaffold0115 (202-288)||(12076-12162)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 38921729 - 38921455
Alignment:
Q  13 gcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatg 112  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38921729 gcataggtgttggtgatcatgagttcatgagtagtgttggagaagatgaa-ggaattgggggcattgaagaagattgaagaagatgatggcagaaacatg 38921631  T
Q  113 attgcggtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtt 212  Q
    ||||  |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38921630 attgttgtcattttggtccctcatctatgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtt 38921531  T
Q  213 tttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    ||| |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38921530 tttggttcatttcattgatctagggatgtgcctgatagtgagcaacactttcagggacccaaatgagggtttactc 38921455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 35968502 - 35968757
Alignment:
Q  22 ttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtc 121  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||          ||||||||| ||| ||||||||||||  |||    
T  35968502 ttggtgggcatgagttcatgagtagagttggagaagatgaa-ggaattcggggccttga----------agaagatgatggcggaaacatgattgttgtc 35968590  T
Q  122 attttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcg 221  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  35968591 attttggtccctcatctatgagtataacaaagttaacaccaagttaacgttttggatgcatttgactaacaaaacaataattgggggagtttttggttcg 35968690  T
Q  222 ttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    ||| ||||||||| | |||||||||||||||| ||||||||||||||| |||| | |||||||||||    
T  35968691 tttcattgatctatgaatgtgcctgatagcgaacaacactttcagggatccaattaagggtttactc 35968757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 290 - 406
Target Start/End: Original strand, 9887895 - 9888011
Alignment:
Q  290 taaataaaagaattgcactaaagatctttaaaccatatcaattaacccaaaccagacaactttatgatcatgccgtactttctacaaaatgtattaagtg 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  9887895 taaataaaagaattgcactaaagatctttaaaccatatcaattaacccaaaccagacaactttatgatcatggcgtattttgtacaaaatgtattaagtg 9887994  T
Q  390 atcttttgagacataat 406  Q
    ||||||||||| |||||    
T  9887995 atcttttgagatataat 9888011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 16727947 - 16727813
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||   |||| || ||||||||||||||||| |||||  ||| | ||| |||||||||    
T  16727947 gttaacatcaagttaatgttttggatgcatttgactaacggaacagacattgaggaagtttttagttcgttttcttgattcaggaacgtggctgatagcg 16727848  T
Q  253 agcaacactttcagggacccaaatgagggtttact 287  Q
    ||  |||||||||| ||||||||||||||||||||    
T  16727847 aggtacactttcagcgacccaaatgagggtttact 16727813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 16306739 - 16306777
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaac 191  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  16306739 gttaactccaagttaacgttttagatgcatttgactaac 16306777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 30830200 - 30829925
Alignment:
Q  13 gcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatg 112  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||    
T  30830200 gcataggtgttggtgagcatgagttcatgagtagtgttgaagaagatgaa-ggaattgagggcattgaagaagattgaaaaagatgatggcagaaacatg 30830102  T
Q  113 attgcggtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtt 212  Q
    |||| | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30830101 attgtg-tcattttggtccctcatctatgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtt 30830003  T
Q  213 tttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 290  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30830002 tttggttcgtttcattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 30829925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 52190144 - 52190433
Alignment:
Q  13 gcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatg 112  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52190144 gcataggtattggtgagcatgagttcatgagtagtgttggagaagatgaa-ggaattgagggcattgaagaagattgaagaagatgaaggcagaaacatg 52190242  T
Q  113 attgcggtcattttggtccctcgtctatgagtataacgg------------agttaacaccaagttaacgttttggatgcatttgactaacgaaacaata 200  Q
    ||||  |||||||||||||||||||||||||||||||||            | |||||||||||||||||||||||||||||||||||||| |||||       
T  52190243 attgttgtcattttggtccctcgtctatgagtataacggacacatcagcacatttaacaccaagttaacgttttggatgcatttgactaacaaaacagac 52190342  T
Q  201 attgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctta 291  Q
    ||||||||||||||| |||||||| ||||||| | |||| || |||||||||||   ||||||||||||||||||||||||||||||||||    
T  52190343 attgggggagtttttggttcgtttaattgatccatggatctggctgatagcgagatgcactttcagggacccaaatgagggtttactctta 52190433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 161 - 289
Target Start/End: Complemental strand, 52189313 - 52189185
Alignment:
Q  161 caagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacac 260  Q
    |||||||||||||||||||||||||||||||| ||||   |||| | ||||||||  || |||| ||||||| ||||||||| |||||||||||   |||    
T  52189313 caagttaacgttttggatgcatttgactaacggaacatacattgagcgagtttttgatttgtttaattgatccagggatgtggctgatagcgaggtgcac 52189214  T
Q  261 tttcagggacccaaatgagggtttactct 289  Q
    |||||||||||||||||||||||||||||    
T  52189213 tttcagggacccaaatgagggtttactct 52189185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 153 - 275
Target Start/End: Complemental strand, 31409445 - 31409326
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    |||||||||||||||||||||||||||||||||||||||| |||   |  || |||||||||| ||||||||  |||||| | ||| |||  ||||||||    
T  31409445 gttaacaccaagttaacgttttggatgcatttgactaacggaac---agatgagggagtttttggttcgtttatttgatccaaggacgtggttgatagcg 31409349  T
Q  253 agcaacactttcagggacccaaa 275  Q
    ||   ||||||||||||||||||    
T  31409348 aggtgcactttcagggacccaaa 31409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 290
Target Start/End: Original strand, 8480923 - 8481011
Alignment:
Q  202 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 290  Q
    |||||||||||||| || ||||| ||||||| ||||| ||| |||||||||||  |||||||||||||| |||||||| ||||| ||||    
T  8480923 ttgggggagtttttggtgcgtttcattgatccagggacgtgactgatagcgagatacactttcagggactcaaatgagagtttattctt 8481011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 31409643 - 31409574
Alignment:
Q  17 aggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagat 87  Q
    |||||||| |||||||||||| |||| ||| ||||||||||||| |||||||||| |||||||||||||||    
T  31409643 aggtgttgttgagcatgagtttatgaatagtgttggagaagatg-aaggaattggaggcattgaagaagat 31409574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 288
Target Start/End: Complemental strand, 41774727 - 41774644
Alignment:
Q  205 ggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||||  | |||||| |||||  ||||| |||  ||||||||||  ||||||||||||||||||||||| ||||||||    
T  41774727 ggggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagagtttactc 41774644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 8479738 - 8479652
Alignment:
Q  202 ttgggggag-tttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttact 287  Q
    ||||||||| ||||| || |||| |||||||| ||| | ||| |||||||| ||  |||||||||||||||||||||||| ||||||    
T  8479738 ttgggggaggtttttggtgcgttgtattgatccaggaacgtggctgatagcaagatacactttcagggacccaaatgaggatttact 8479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 41780271 - 41780314
Alignment:
Q  245 tgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    ||||||||||  |||||||||| |||||||||||||||||||||    
T  41780271 tgatagcgaggtacactttcagagacccaaatgagggtttactc 41780314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 23545329 - 23545406
Alignment:
Q  207 ggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggttt 284  Q
    ||||||||| ||||||||| |||||  || || ||| |||||||| ||  ||||||||| |||| |||||||||||||    
T  23545329 ggagtttttggttcgttttcttgattcagagacgtgtctgatagcaaggtacactttcaaggactcaaatgagggttt 23545406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 8479891 - 8479843
Alignment:
Q  91 agaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 139  Q
    ||||||||||||||| ||||| |||  | ||||||||||||||||||||    
T  8479891 agaagatgaaggcaggaacataattctgatcattttggtccctcgtcta 8479843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 41739896 - 41739622
Alignment:
Q  13 gcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatg 112  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  41739896 gcataggtgctggtgagcatgagttcatgagtagtgttggagaagatgaa-ggaattgggggcattgaagaagattgaaaaagatgatggcagaaacatg 41739798  T
Q  113 attgcggtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtt 212  Q
    ||||  ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41739797 attgttgtcattttgatccctcatctatgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtt 41739698  T
Q  213 tttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    ||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  41739697 tttggttcgtttcattgatctagggatgtgcctgatagcgagcaatactttcaggaacccaaatgagggtttactc 41739622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 42537799 - 42537718
Alignment:
Q  205 ggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttac 286  Q
    ||||||||||| |||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  42537799 ggggagtttttggttcgtttcattgattcagggatgtacctgatagcgagcaacactttcagggacccaactgagggtttac 42537718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 45291932 - 45292014
Alignment:
Q  206 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||| ||||| ||  |||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  45291932 gggagtttttggttcgattccttgattcagggatgtgcctgatagcgaggtacactttcagggacccaaatgagggtttactc 45292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 40601826 - 40601882
Alignment:
Q  231 tctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttact 287  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  40601826 tctagggatgtgcctgatagcgaggcacactttcagggacccaaatgagggtttact 40601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 45296057 - 45296139
Alignment:
Q  206 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||| ||||| ||  |||||| | |||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  45296057 gggagtttttggttcgattccttgatccatggatgtgcctgatagcgaggtacacttttagggacccaaatgagggtttactc 45296139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 38516702 - 38516620
Alignment:
Q  206 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||| ||| | ||  |||||| ||||||||| ||||||||||   ||||||||||||||||||||||||||||||||    
T  38516702 gggagtttttggttggattccttgatccagggatgtgtctgatagcgatgtacactttcagggacccaaatgagggtttactc 38516620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 40600763 - 40600710
Alignment:
Q  236 ggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactct 289  Q
    ||||||||||||||| |||  ||| |||||||||||||||||||||||||||||    
T  40600763 ggatgtgcctgatagagaggcacattttcagggacccaaatgagggtttactct 40600710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 25272069 - 25272106
Alignment:
Q  154 ttaacaccaagttaacgttttggatgcatttgactaac 191  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  25272069 ttaacactaagttaacgttttgaatgcatttgactaac 25272106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 33061622 - 33061554
Alignment:
Q  220 cgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||| ||| || |||||||||||||| ||||||  |||||||||  ||||||||| ||| |||||||    
T  33061622 cgttttcttgttccagggatgtgcctgacagcgaggcacactttcaaagacccaaataaggatttactc 33061554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 35063434 - 35063684
Alignment:
Q  38 catgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctcgtc 137  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35063434 catgagtagtgttggagaagatgaa-ggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgttgtcattttggtccctcgtc 35063532  T
Q  138 tatgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctaggg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |    
T  35063533 tatgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttggttcgtttcattgatctagag 35063632  T
Q  238 atgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactct 289  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  35063633 atgtgcctgatagtgagcaacactttcagagacccaaatgagggtttactct 35063684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 26529643 - 26529508
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||  |||| |||||||||||||||||||| |||||  ||||| ||| |||||||||    
T  26529643 gttaacatcaagttaacgttttggatgcatttgactaacagaacaaacattgagggagtttttagttcgttttcttgattcagggacgtgtctgatagcg 26529544  T
Q  253 agcaacactttcagggacccaaatgagggtttactc 288  Q
    ||  ||||||||||||||||||||||||||||||||    
T  26529543 aggtacactttcagggacccaaatgagggtttactc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 36574089 - 36573960
Alignment:
Q  161 caagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacac 260  Q
    |||||||||||||||||||||||||||||||| ||||   |||| |||||||||||||||||||| |||||  ||||| |||  ||||||||||  ||||    
T  36574089 caagttaacgttttggatgcatttgactaacggaacagacattgagggagtttttagttcgttttcttgattcagggacgtggttgatagcgaggtacac 36573990  T
Q  261 tttcagggacccaaatgagggtttactctt 290  Q
    ||||||||||| ||||||| ||||||||||    
T  36573989 tttcagggacctaaatgagtgtttactctt 36573960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 154 - 290
Target Start/End: Complemental strand, 49917522 - 49917387
Alignment:
Q  154 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 253  Q
    |||||| ||||||||| |||||||||||||||||||||  | |||  | |  ||||||||||||||| ||  ||||||| | ||||||| || |||||||    
T  49917522 ttaacatcaagttaacattttggatgcatttgactaacagatcaaacaatacgggagtttttagttcattaaattgatccaaggatgtgact-atagcga 49917424  T
Q  254 gcaacactttcagggacccaaatgagggtttactctt 290  Q
    || | |||||||| |||||||||||| ||||||||||    
T  49917423 gctatactttcagagacccaaatgagagtttactctt 49917387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 36575494 - 36575600
Alignment:
Q  184 tgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtt 283  Q
    ||||||||| ||||   |||| || ||||||| ||||||||| ||||| || ||| ||| |||||||||||  |||||||||||||| ||||||||||||    
T  36575494 tgactaacggaacagacattgaggaagtttttggttcgttttcttgatttaaggacgtgtctgatagcgaggtacactttcagggactcaaatgagggtt 36575593  T
Q  284 tactctt 290  Q
    |||||||    
T  36575594 tactctt 36575600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 26531064 - 26531156
Alignment:
Q  201 attgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactcttaaa 293  Q
    |||| |||||||||| ||||||||| |||||  ||||| ||| || ||||||||  ||||||||||||||| |||||||||||||||| ||||    
T  26531064 attgagggagtttttggttcgttttcttgattcagggacgtgtctaatagcgaggtacactttcagggaccaaaatgagggtttactcataaa 26531156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 49919676 - 49919762
Alignment:
Q  202 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||||||| || ||||| ||||||| ||||| ||| ||||||||||   ||||||||| ||||||||||||| ||||||||    
T  49919676 ttgggggagtttttggtgcgtttcattgatccagggaagtgactgatagcgatgcacactttcaaggacccaaatgagagtttactc 49919762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 26530545 - 26530500
Alignment:
Q  245 tgatagcgagcaacactttcagggacccaaatgagggtttactctt 290  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||    
T  26530545 tgatagcgaggtacactttcagggacccaaatgaaggtttactctt 26530500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 35062668 - 35062564
Alignment:
Q  184 tgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtt 283  Q
    ||||||||| |||||  ||||||||||||||| ||| |||| ||||||  |||||||||  ||||| ||||    ||||| ||| |||||||||| ||||    
T  35062668 tgactaacggaacaaacattgggggagtttttggttagtttaattgattcagggatgtggttgataacgaggtgaacttttaggaacccaaatgaaggtt 35062569  T
Q  284 tactc 288  Q
    |||||    
T  35062568 tactc 35062564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 36574999 - 36574954
Alignment:
Q  245 tgatagcgagcaacactttcagggacccaaatgagggtttactctt 290  Q
    ||||||||||  ||||||||||||||||||||||  ||||||||||    
T  36574999 tgatagcgaggtacactttcagggacccaaatgaaagtttactctt 36574954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 17864490 - 17864777
Alignment:
Q  13 gcataggtgttggtgagcatgagttcatgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatg 112  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  17864490 gcataggtgttggtgagcatgagttcatgagtagtgttgaagaagatgaa-ggaattgagaacattgaagaagattgaagaagatgaaggcagaaacatg 17864588  T
Q  113 attgcggtcattttggtccctcgtctatgagtataacgg------------agttaacaccaagttaacgttttggatgcatttgactaacgaaacaata 200  Q
    ||||| ||||||||||||||| |||||||||||||| ||            | ||||||||||||||| |||||||||||||||||||||| ||| |       
T  17864589 attgctgtcattttggtccctagtctatgagtataatggacacatcaacacaattaacaccaagttaatgttttggatgcatttgactaacaaaatagac 17864688  T
Q  201 attgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactct 289  Q
    |||| ||||||| || ||||||||  ||||||  |||||||| |||||||||||   |||||||| ||| |||||||||||||||||||    
T  17864689 attgagggagttcttggttcgtttatttgatccggggatgtggctgatagcgagatgcactttcaaggaaccaaatgagggtttactct 17864777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 17863591 - 17863466
Alignment:
Q  163 agttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactt 262  Q
    |||||||||||||||||||||||||| ||| ||||   ||||| ||||||||| |||  ||| ||||||| | ||||||| |||||||||||   |||||    
T  17863591 agttaacgttttggatgcatttgactgacggaacatacattggaggagtttttggtttatttaattgatccaaggatgtggctgatagcgaggtgcactt 17863492  T
Q  263 tcagggacccaaatgagggtttactc 288  Q
    ||||||||||||||||||||||||||    
T  17863491 tcagggacccaaatgagggtttactc 17863466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 289
Target Start/End: Complemental strand, 3870902 - 3870767
Alignment:
Q  154 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 253  Q
    ||||||| || ||||||||||||| | | |||||||||| |||||  |||||||||||||||  |||| || ||||||||||||| ||| ||||||||||    
T  3870902 ttaacacgaacttaacgttttggacgaaattgactaacggaacaactattgggggagtttttgattcgcttaattgatctagggacgtggctgatagcga 3870803  T
Q  254 gcaacactttcagggacccaaatgagggtttactct 289  Q
        || |||||||||||||| ||||||||||||||    
T  3870802 aatgcattttcagggacccaagtgagggtttactct 3870767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 32565560 - 32565695
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    ||||||| |||||||||||||||||||||||||||||||  |||    |||||||||||||||  ||| ||  ||||||| |||||   | |||||||||    
T  32565560 gttaacatcaagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttgattcattaaattgatcgagggactggtctgatagcg 32565659  T
Q  253 agcaacactttcagggacccaaatgagggtttactc 288  Q
    ||  ||||||||||||||| ||| ||||||||||||    
T  32565660 agggacactttcagggacctaaacgagggtttactc 32565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 287
Target Start/End: Original strand, 3872215 - 3872346
Alignment:
Q  156 aacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagc 255  Q
    |||| ||| ||||||||||||| | | |||||||||| || ||  |||| | |||||||| |||||||| ||||||  ||||| ||| |||||||||||     
T  3872215 aacaacaacttaacgttttggacgaaattgactaacggaataaccattgagagagtttttggttcgtttaattgatacagggacgtggctgatagcgagg 3872314  T
Q  256 aacactttcagggacccaaatgagggtttact 287  Q
      |||||||||||||||||| |||||||||||    
T  3872315 tgcactttcagggacccaaacgagggtttact 3872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 12887715 - 12887786
Alignment:
Q  217 gttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    ||||| ||| |||||| |||||| || ||||| |||||  ||||||||||||||||||||||||||||||||    
T  12887715 gttcgatttcttgatccagggatatgtctgatcgcgaggtacactttcagggacccaaatgagggtttactc 12887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 5005789 - 5005708
Alignment:
Q  207 ggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||  | |||||| |||||  ||||| |||  ||||||||||  ||||||||||||||||||||||||||||||||    
T  5005789 ggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 5005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 291
Target Start/End: Complemental strand, 32564641 - 32564504
Alignment:
Q  154 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 253  Q
    |||||||||||||||||||||||||  | |||||| | | ||| |  |||| ||||||||||| |   || | |||||| |||||   | ||||||||||    
T  32564641 ttaacaccaagttaacgttttggattaaattgactgatggaactaacattgagggagtttttaataatttatgttgatcgagggactggtctgatagcga 32564542  T
Q  254 gcaacactttcagggacccaaatgagggtttactctta 291  Q
    |  ||||||||| ||||||||||||||||||| |||||    
T  32564541 gggacactttcaaggacccaaatgagggtttattctta 32564504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 5014842 - 5014885
Alignment:
Q  245 tgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    
T  5014842 tgatagcgaggtacactttcagggacccaaatgagggtttactc 5014885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 37241113 - 37241028
Alignment:
Q  203 tgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    ||||||||||||| || ||||| ||||||| | | | ||| |||||||||||  ||||||||||| ||||||| |||| |||||||    
T  37241113 tgggggagtttttggtgcgtttcattgatccaagaacgtgactgatagcgagatacactttcaggaacccaaacgaggatttactc 37241028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 12888239 - 12888305
Alignment:
Q  222 ttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||| ||||||| |||| ||| |||||||||||  ||| |||||||||| ||||||||| |||||||    
T  12888239 ttttcttgatcttgggacgtgtctgatagcgaggtacaatttcagggactcaaatgaggatttactc 12888305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 153 - 290
Target Start/End: Complemental strand, 4753663 - 4753526
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    ||||||||||||||||||||||||||||||||||||||| |||||   |||| ||||||||||  ||| ||| ||||||| |||||   | |||||||||    
T  4753663 gttaacaccaagttaacgttttggatgcatttgactaacaaaacatacattgagggagtttttgattcatttaattgatccagggactggtctgatagcg 4753564  T
Q  253 agcaacactttcagggacccaaatgagggtttactctt 290  Q
    ||  ||||||||||||||||||| ||||||||||||||    
T  4753563 agagacactttcagggacccaaacgagggtttactctt 4753526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 289
Target Start/End: Original strand, 31622039 - 31622167
Alignment:
Q  161 caagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacac 260  Q
    ||||||||||||||||||||||||||| |||| |||||  |||| |||||||||||||| ||||| |||||  ||||| |||  ||||| ||||  ||||    
T  31622039 caagttaacgttttggatgcatttgacaaacggaacaaacattgagggagtttttagtttgttttcttgattcagggacgtggttgataacgaggtacac 31622138  T
Q  261 tttcagggacccaaatgagggtttactct 289  Q
    |||||||||||||||| ||||||||||||    
T  31622139 tttcagggacccaaataagggtttactct 31622167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 161 - 289
Target Start/End: Original strand, 36669089 - 36669217
Alignment:
Q  161 caagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacac 260  Q
    |||||||||||||||||||||||||||||||  ||||   |||| |||||||||||||| ||||| |||||  ||||| ||| |||||||||||   |||    
T  36669089 caagttaacgttttggatgcatttgactaacagaacagacattgagggagtttttagtttgttttcttgattcagggacgtggctgatagcgaggtgcac 36669188  T
Q  261 tttcagggacccaaatgagggtttactct 289  Q
    ||||| ||| |||||| ||||||||||||    
T  36669189 tttcatggatccaaattagggtttactct 36669217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 288
Target Start/End: Original strand, 40894796 - 40894932
Alignment:
Q  152 agttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagc 251  Q
    ||||||| || ||||||||||||||| |    ||||||||| || |   |||||||||||||||||||||||| ||||||| ||||| || |||||||||    
T  40894796 agttaacgcccagttaacgttttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtacctgatagc 40894895  T
Q  252 gagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||  ||||||| ||||| ||||||||||||||||||    
T  40894896 gaggtacacttttagggatccaaatgagggtttactc 40894932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 4755036 - 4755094
Alignment:
Q  227 ttgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggttta 285  Q
    |||||||||||| ||| |||||||||||  |||||||||| ||||||||||||||||||    
T  4755036 ttgatctagggacgtgtctgatagcgagggacactttcagagacccaaatgagggttta 4755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 35298681 - 35298556
Alignment:
Q  163 agttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactt 262  Q
    |||||||||||||||||    |||||||||||| |    || |||||||||||  | |||||| |||||  ||||| |||  ||||||||||  ||||||    
T  35298681 agttaacgttttggatgggaatgactaacgaaagagactttcggggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactt 35298582  T
Q  263 tcagggacccaaatgagggtttactc 288  Q
    ||||| ||||||||||||||||||||    
T  35298581 tcaggaacccaaatgagggtttactc 35298556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 35306087 - 35306176
Alignment:
Q  205 ggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactcttaaat 294  Q
    |||||||||||  |||||||| |||||  |||||  ||  ||||||||||  ||||||||||||||| ||||||||||||||||| ||||    
T  35306087 ggggagtttttttttcgttttcttgattcagggacatgtttgatagcgaggtacactttcagggacctaaatgagggtttactctaaaat 35306176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 31620605 - 31620525
Alignment:
Q  208 gagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||| ||||||||| |||||  | ||| ||  |||||||||||  |||||||||||||| |||||||||||||||||    
T  31620605 gagtttttggttcgttttcttgattcaaggacgtatctgatagcgaggtacactttcagggactcaaatgagggtttactc 31620525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 36666306 - 36666196
Alignment:
Q  184 tgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagg-gacccaaatgagggt 282  Q
    ||||||||| ||||   |||| || ||||||||||||||||| |||||  ||  ||||| || || |||||  ||||||||| | ||||||||| |||||    
T  36666306 tgactaacggaacagacattgaggaagtttttagttcgttttcttgattcagaaatgtgtctaattgcgaggtacactttcaagtgacccaaataagggt 36666207  T
Q  283 ttactcttaaa 293  Q
    |||||||||||    
T  36666206 ttactcttaaa 36666196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 31621130 - 31621175
Alignment:
Q  245 tgatagcgagcaacactttcagggacccaaatgagggtttactctt 290  Q
    ||||||||||  ||||||| |||||||||||||| |||||||||||    
T  31621130 tgatagcgaggtacacttttagggacccaaatgaaggtttactctt 31621175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 37464967 - 37465050
Alignment:
Q  206 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactct 289  Q
    |||||||||| ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  37464967 gggagtttttggtttgtttcattgatctagggatgtacctgatagcgagcaacactttcagggacccaaattagggtttactct 37465050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 9099697 - 9099560
Alignment:
Q  151 gagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatag 250  Q
    |||||||||| ||||||||||||||||   |||||||||||| ||| |  ||||   |||||||| |||||||| ||||||  |||||||||| ||||||    
T  9099697 gagttaacactaagttaacgttttggacttatttgactaacggaaccaacattgaaagagtttttggttcgtttcattgattcagggatgtgcttgatag 9099598  T
Q  251 cgagcaacactttcagggacccaaatgagggtttactc 288  Q
    ||||  ||||||| ||||||||||||||||||||||||    
T  9099597 cgaggtacactttaagggacccaaatgagggtttactc 9099560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 19801919 - 19801786
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    |||||||| |||||||||||||||||  ||||||||||| || ||| |  ||||||||||||| |||||||| ||||||||| ||| ||  |||||||||    
T  19801919 gttaacacaaagttaacgttttggataaatttgactaacaaatcaaaa--tgggggagtttttggttcgtttaattgatctaaggacgtagctgatagcg 19801822  T
Q  253 agcaacactttcagggacccaaatgagggtttactc 288  Q
    ||  |||||||||||||||  |||||||||||||||    
T  19801821 aggtacactttcagggaccggaatgagggtttactc 19801786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 20997757 - 20997633
Alignment:
Q  164 gttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacacttt 263  Q
    ||||||||||||||   |||||||||||||||| |  ||||  ||||||||| ||| ||||||||||||  ||||||||| ||||||||||  ||| |||    
T  20997757 gttaacgttttggacttatttgactaacgaaaccaacattgaaggagtttttggtttgttttattgatcctgggatgtgcttgatagcgaggtacatttt 20997658  T
Q  264 cagggacccaaatgagggtttactc 288  Q
    |||||||||||||||||||||||||    
T  20997657 cagggacccaaatgagggtttactc 20997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 36163518 - 36163383
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    |||||||||||||||||||||||||||||||||||||||  |||    |||||||||||||||  ||| ||  ||||||  ||||||  | |||||||||    
T  36163518 gttaacaccaagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttgattcattaaattgattgagggattggtctgatagcg 36163419  T
Q  253 agcaacactttcagggacccaaatgagggtttactc 288  Q
    ||  ||||||||||||| |||||||| |||||||||    
T  36163418 agggacactttcagggatccaaatgaaggtttactc 36163383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 294
Target Start/End: Original strand, 36164503 - 36164643
Alignment:
Q  154 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 253  Q
    |||||||||||||||||||||||||  | |||||||||| ||| |  |||| | ||||||||| |   || | |||||| |||||   | ||||||||||    
T  36164503 ttaacaccaagttaacgttttggattaaattgactaacggaactaacattgagagagtttttaataatttctgttgatcgagggactggtctgatagcga 36164602  T
Q  254 gcaacactttcagggacccaaatgagggtttactcttaaat 294  Q
    |  ||||||||||||||||||||||||||||||||||||||    
T  36164603 gggacactttcagggacccaaatgagggtttactcttaaat 36164643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 37463814 - 37463680
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    ||||||||||||||||||||||||| | |  ||||||| | || |   ||| |  |||||||| | |||||| ||||||| ||||| |||| ||||||||    
T  37463814 gttaacaccaagttaacgttttggacgtaaatgactaatggaagagacattagatgagtttttggatcgtttcattgatccagggacgtgcttgatagcg 37463715  T
Q  253 agcaacactttcagggacccaaatgagggtttact 287  Q
    || |||||||||||| ||||||  |||||||||||    
T  37463714 agaaacactttcaggaacccaagcgagggtttact 37463680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 11137999 - 11137912
Alignment:
Q  201 attgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||| |||||||||| |||||||||  ||||| ||||||||| |||||||||||  ||| ||| || || ||||||||||||||||||    
T  11137999 attgagggagtttttggttcgttttcatgatccagggatgtgtctgatagcgaggtacatttttagagaaccaaatgagggtttactc 11137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 19801995 - 19801947
Alignment:
Q  86 attgaagaagatgaaggcagaaacatgattgcggtcattttggtccctc 134  Q
    |||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  19801995 attgaagaagttgaaggcagaaacataattgtggtcattttggtccctc 19801947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 19802032 - 19801947
Alignment:
Q  38 catgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctc 134  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||          |||| ||||||||||||||| |||| |||||||||||||||||    
T  19802032 catgagtagtgatggagaagatgaa-ggaattgggggcattgaa----------gaagttgaaggcagaaacataattgtggtcattttggtccctc 19801947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 18939847 - 18939915
Alignment:
Q  220 cgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||| ||||  |||||| |||  |||||||||   ||||||||||||||||||||||||||||||||    
T  18939847 cgttttcttgacttagggacgtggttgatagcgaagtacactttcagggacccaaatgagggtttactc 18939915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 288
Target Start/End: Complemental strand, 18912579 - 18912548
Alignment:
Q  257 acactttcagggacccaaatgagggtttactc 288  Q
    ||||||||||||||||||||||||||||||||    
T  18912579 acactttcagggacccaaatgagggtttactc 18912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 20884353 - 20884324
Alignment:
Q  161 caagttaacgttttggatgcatttgactaa 190  Q
    ||||||||||||||||||||||||||||||    
T  20884353 caagttaacgttttggatgcatttgactaa 20884324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 293
Target Start/End: Original strand, 18192932 - 18193071
Alignment:
Q  154 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 253  Q
    |||||||||||||||||||||||||  | |||||||||  ||| |  |||| ||||||||||| |   || | |||||| |||||   ||||||||||||    
T  18192932 ttaacaccaagttaacgttttggattaaattgactaacagaactaacattgagggagtttttaataatttatgttgatcgagggactggcctgatagcga 18193031  T
Q  254 gcaacactttcagggacccaaatgagggtttactcttaaa 293  Q
    |  |||||||||||||||||||||||||||||||||||||    
T  18193032 gggacactttcagggacccaaatgagggtttactcttaaa 18193071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 18191880 - 18191746
Alignment:
Q  154 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 253  Q
    |||| |||||||||||||||||||||||||||||||||  ||||   |||||||||||||||  ||| ||  ||||||  |||||   | |||||||||     
T  18191880 ttaataccaagttaacgttttggatgcatttgactaacataacatacattgggggagtttttgattcattaaattgattgagggactggtctgatagcgt 18191781  T
Q  254 gcaacactttcagggacccaaatgagggtttactc 288  Q
    |  ||||||||||||||||||||||||||||||||    
T  18191780 gggacactttcagggacccaaatgagggtttactc 18191746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 9448745 - 9448829
Alignment:
Q  206 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 290  Q
    |||||||||| ||||| ||  |||||| ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  9448745 gggagtttttggttcgattccttgatccagggatgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactctt 9448829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 289
Target Start/End: Original strand, 30758798 - 30758934
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 252  Q
    |||||||||||||||| |||||||||||||||||||||| |||||   |||| ||||||||||  |||  |||||||||| |  || | |  ||| ||||    
T  30758798 gttaacaccaagttaatgttttggatgcatttgactaacaaaacatacattgagggagtttttgattcaatttattgatcaaatgacgggtgtgacagcg 30758897  T
Q  253 agcaacactttcagggacccaaatgagggtttactct 289  Q
    ||  ||||||||| |||||||||||||||||||||||    
T  30758898 agggacactttcaaggacccaaatgagggtttactct 30758934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 288
Target Start/End: Original strand, 11020315 - 11020449
Alignment:
Q  154 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 253  Q
    |||||||||||||||| ||||||||  | |||||||| | ||| |  |||| ||||||||||| |   || | |||||| ||||||  | ||||||||||    
T  11020315 ttaacaccaagttaacattttggattaaattgactaatggaactaacattgagggagtttttaataatttctgttgatcgagggattggtctgatagcga 11020414  T
Q  254 gcaacactttcagggacccaaatgagggtttactc 288  Q
    |  ||||||||||||||||||||||||||||||||    
T  11020415 gggacactttcagggacccaaatgagggtttactc 11020449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 226173 - 226119
Alignment:
Q  236 ggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 290  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  226173 ggatgtgcctgatagcgaggcacactttcaaggacccaaatgagggtttactctt 226119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 227233 - 227285
Alignment:
Q  236 ggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||| |||| |||  |||||||||| |||||||||||||||||||||    
T  227233 ggatgtgcctaatagtgagacacactttcagagacccaaatgagggtttactc 227285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 21396429 - 21396392
Alignment:
Q  153 gttaacaccaagttaacgttttggatgcatttgactaa 190  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  21396429 gttaacaccaagttagcgttttggatgtatttgactaa 21396392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 6055 - 6141
Alignment:
Q  202 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||||||| || ||||| ||| ||||||||| | | |||||||||||  |||||||||||||| |||||||||||||||||    
T  6055 ttgggggagtttttggtgcgtttcattaatctagggacggggctgatagcgaggtacactttcagggactcaaatgagggtttactc 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 288
Target Start/End: Original strand, 13795 - 13881
Alignment:
Q  202 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||||||| || ||||| ||| ||||||||| | | |||||||||||  |||||||||||||| |||||||||||||||||    
T  13795 ttgggggagtttttggtgcgtttcattaatctagggacggggctgatagcgaggtacactttcagggactcaaatgagggtttactc 13881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 4422 - 4336
Alignment:
Q  202 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||||||| || ||||| ||||||||||||| ||| ||||||||||   ||||||| ||||| ||||| ||||||||||||    
T  4422 ttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacacttttagggatccaaacgagggtttactc 4336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 12162 - 12076
Alignment:
Q  202 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 288  Q
    |||||||||||||| || ||||| ||||||||||||| ||| ||||||||||   ||||||| ||||| ||||| ||||||||||||    
T  12162 ttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacacttttagggatccaaacgagggtttactc 12076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University