View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14724_low_4 (Length: 325)

Name: NF14724_low_4
Description: NF14724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14724_low_4
NF14724_low_4
[»] chr3 (18 HSPs)
chr3 (8-210)||(28905015-28905217)
chr3 (239-322)||(28905246-28905327)
chr3 (8-93)||(40272812-40272898)
chr3 (8-93)||(54484762-54484848)
chr3 (8-93)||(15797291-15797377)
chr3 (8-93)||(34771364-34771450)
chr3 (36-93)||(13628790-13628847)
chr3 (36-77)||(29366736-29366777)
chr3 (36-93)||(50624953-50625010)
chr3 (36-93)||(53996565-53996622)
chr3 (8-77)||(6411838-6411908)
chr3 (8-74)||(9276335-9276401)
chr3 (8-92)||(22609836-22609921)
chr3 (36-93)||(25944570-25944627)
chr3 (36-93)||(34420643-34420700)
chr3 (9-93)||(52926219-52926304)
chr3 (37-93)||(516513-516569)
chr3 (19-94)||(39203596-39203672)
[»] chr1 (15 HSPs)
chr1 (8-93)||(46247953-46248039)
chr1 (8-94)||(4349710-4349797)
chr1 (8-90)||(46991876-46991959)
chr1 (36-77)||(42304223-42304264)
chr1 (38-93)||(8197146-8197201)
chr1 (19-93)||(20999850-20999925)
chr1 (8-62)||(35117797-35117854)
chr1 (8-61)||(15505636-15505690)
chr1 (36-93)||(10668328-10668385)
chr1 (8-56)||(18724582-18724631)
chr1 (36-77)||(27474381-27474422)
chr1 (36-93)||(35005226-35005283)
chr1 (36-93)||(50606504-50606561)
chr1 (10-93)||(31382214-31382298)
chr1 (19-90)||(45402179-45402251)
[»] chr2 (16 HSPs)
chr2 (36-90)||(4516354-4516408)
chr2 (8-93)||(9671228-9671314)
chr2 (8-93)||(10546212-10546298)
chr2 (8-93)||(8455316-8455402)
chr2 (8-93)||(10543747-10543835)
chr2 (8-77)||(14444777-14444847)
chr2 (36-94)||(14530398-14530456)
chr2 (36-93)||(34766333-34766390)
chr2 (38-94)||(8575975-8576031)
chr2 (36-79)||(24059010-24059053)
chr2 (19-93)||(40762234-40762309)
chr2 (8-77)||(17896309-17896379)
chr2 (8-93)||(36871541-36871626)
chr2 (8-92)||(13245096-13245181)
chr2 (36-93)||(44643601-44643658)
chr2 (36-92)||(40579750-40579806)
[»] chr4 (24 HSPs)
chr4 (36-93)||(33836487-33836544)
chr4 (8-93)||(25629098-25629184)
chr4 (36-94)||(30690175-30690233)
chr4 (8-93)||(35567219-35567305)
chr4 (36-94)||(38755907-38755965)
chr4 (36-94)||(44363129-44363187)
chr4 (36-93)||(16911642-16911699)
chr4 (36-93)||(20639658-20639715)
chr4 (36-93)||(47482850-47482907)
chr4 (36-79)||(14983912-14983955)
chr4 (39-94)||(40553936-40553991)
chr4 (8-61)||(5648307-5648361)
chr4 (8-93)||(9832313-9832399)
chr4 (36-94)||(11394930-11394988)
chr4 (36-94)||(11404657-11404715)
chr4 (8-93)||(20225031-20225117)
chr4 (8-93)||(47528530-47528616)
chr4 (8-93)||(51865038-51865124)
chr4 (8-92)||(6430627-6430712)
chr4 (36-93)||(23501867-23501924)
chr4 (36-93)||(32484311-32484368)
chr4 (19-66)||(5306691-5306739)
chr4 (8-91)||(29207900-29207984)
chr4 (8-63)||(47441560-47441616)
[»] chr5 (10 HSPs)
chr5 (18-93)||(16957373-16957449)
chr5 (8-93)||(3771388-3771474)
chr5 (8-93)||(24448939-24449025)
chr5 (36-93)||(29334474-29334531)
chr5 (36-93)||(38879661-38879718)
chr5 (39-93)||(19093894-19093948)
chr5 (36-94)||(30877563-30877621)
chr5 (8-93)||(32703471-32703557)
chr5 (36-77)||(25622538-25622579)
chr5 (8-75)||(43574655-43574723)
[»] scaffold0057 (1 HSPs)
scaffold0057 (19-93)||(46891-46966)
[»] scaffold0187 (2 HSPs)
scaffold0187 (9-58)||(10085-10135)
scaffold0187 (9-58)||(20413-20463)
[»] chr8 (15 HSPs)
chr8 (8-61)||(5135321-5135375)
chr8 (8-93)||(12625939-12626025)
chr8 (8-93)||(28817626-28817712)
chr8 (8-91)||(29877143-29877227)
chr8 (8-58)||(2626571-2626622)
chr8 (8-94)||(13160750-13160837)
chr8 (8-58)||(19729389-19729440)
chr8 (19-93)||(35261739-35261814)
chr8 (8-73)||(24365079-24365145)
chr8 (8-61)||(36720845-36720899)
chr8 (39-93)||(39460994-39461048)
chr8 (8-77)||(44530198-44530268)
chr8 (8-92)||(45071313-45071398)
chr8 (37-93)||(40444845-40444901)
chr8 (36-92)||(42083699-42083755)
[»] chr7 (10 HSPs)
chr7 (8-93)||(7879687-7879773)
chr7 (8-93)||(32758308-32758394)
chr7 (8-61)||(35334848-35334902)
chr7 (8-92)||(11617589-11617674)
chr7 (8-94)||(48735121-48735208)
chr7 (8-61)||(1408506-1408560)
chr7 (8-93)||(19265863-19265948)
chr7 (8-93)||(21172009-21172095)
chr7 (8-93)||(42391100-42391186)
chr7 (36-92)||(18747565-18747621)
[»] chr6 (8 HSPs)
chr6 (36-93)||(12885991-12886048)
chr6 (36-93)||(29355855-29355912)
chr6 (8-93)||(1347011-1347097)
chr6 (8-93)||(1354757-1354843)
chr6 (36-94)||(10734904-10734962)
chr6 (8-93)||(26097207-26097293)
chr6 (36-93)||(6808473-6808530)
chr6 (8-77)||(32728173-32728242)
[»] scaffold0049 (1 HSPs)
scaffold0049 (8-94)||(59026-59115)
[»] scaffold1176 (1 HSPs)
scaffold1176 (20-77)||(1603-1661)
[»] scaffold0015 (1 HSPs)
scaffold0015 (8-93)||(48634-48720)
[»] scaffold0311 (1 HSPs)
scaffold0311 (36-77)||(10888-10929)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 28905015 - 28905217
Alignment:
Q  8 ggtaagactgtgtacattacaccaaatatgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctttagtaaagcaagtat 107  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28905015 ggtaagactgtgtacattacaccaaatatgggaccctttcccggaccctgcgtaagcgggaactttagtgtaacgggctgccctttagtaaagcaagtat 28905114  T
Q  108 tgtaggagattatccctaaaaaccacacatactcatgcaacagcaaacatgattatgaacatccggnnnnnnnntcaggctttataactaggataaagtt 207  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||        | ||||||||||||||||||||||||    
T  28905115 tgtaggagattatccctaaaaaccacacatactcatgcaacaacaaacatgattatgaacatctggaaaaaaaattaggctttataactaggataaagtt 28905214  T
Q  208 act 210  Q
    |||    
T  28905215 act 28905217  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 28905246 - 28905327
Alignment:
Q  239 agaaatatataagcatgaaaatgagcatcaaaacccaaagttggtgaaaatcttgagctgagaccacatacagagtataatcta 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  28905246 agaaatatataagcatgaaaatgagcatcaaaacccaaagttggtgaaaatcttgagc--agaccacatacagagtaaaatcta 28905327  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 40272898 - 40272812
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  40272898 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 40272812  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 54484762 - 54484848
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  54484762 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 54484848  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 15797291 - 15797377
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || |||||| || ||||| | |||| ||||||||    
T  15797291 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgtgggagctctagtgcaccgggttgcccttt 15797377  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 34771450 - 34771364
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||||||||||||    
T  34771450 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggctgcccttt 34771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 13628847 - 13628790
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  13628847 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 13628790  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 29366777 - 29366736
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  29366777 tgggaccccttcccggaccctgcgtatgtgggagctttagtg 29366736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 50625010 - 50624953
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| |||||| || |||||||||||||||| |||||||| | |||||||||||||    
T  50625010 tgggacgccttcctgggccctgcgtaagtgggagctttagtgcaccgggctgcccttt 50624953  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 53996622 - 53996565
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||| ||| ||||||| |||||| |||||||| | |||||||||||||    
T  53996622 tgggaccccttccctgacactgcgtatgtgggagctttagtgcaccgggctgcccttt 53996565  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 6411908 - 6411838
Alignment:
Q  8 ggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||| ||| ||||| |||||||||| ||||||||||||||| |||| |||||| | |||| ||||||||    
T  6411908 ggtaaggctgcgtacaatacaccaaatgatgggaccccttcccagaccttgcgtatgcgggagctttagtg 6411838  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 9276335 - 9276401
Alignment:
Q  8 ggtaagactgtgtacattacaccaaatatgggaccccttcccggaccctgcgtaagtgggaacttta 74  Q
    |||||| ||| ||||| ||||||||||   |||||| ||||||||||||||||| | ||||||||||    
T  9276335 ggtaaggctgcgtacaatacaccaaatggtggaccctttcccggaccctgcgtatgcgggaacttta 9276401  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 22609836 - 22609921
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 92  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||| |||||| | |||| ||| |||| | |||| |||||||    
T  22609836 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccttgcgtatgcgggagcttcagtgcaccgggttgccctt 22609921  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 25944570 - 25944627
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||| ||||||||||| |||||| |||||| | | | |||||||||||    
T  25944570 tgggaccccttccctgaccctgcgtatgtgggagctttagcgcaccaggctgcccttt 25944627  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 34420700 - 34420643
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||||||||||||||||| |||||| |||||| |||||||| |   |||||||||||    
T  34420700 tgggaccccttcccggaccttgcgtatgtgggagctttagtgcacatggctgcccttt 34420643  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 52926304 - 52926219
Alignment:
Q  9 gtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||| ||| ||||| ||||||||||  |||||| ||||||||||||||||||| | |||| |||||| | | |||| ||||||||    
T  52926304 gtaaggctgcgtacaatacaccaaatggtgggacaccttcccggaccctgcgtatgcgggagctttagcgcaccgggttgcccttt 52926219  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 516513 - 516569
Alignment:
Q  37 gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||||||||||| ||||||||||| | |||| |||||||| | |||| ||||||||    
T  516513 gggaccccttccccgaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 516569  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 39203596 - 39203672
Alignment:
Q  19 gtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    ||||| ||||||||||  ||||||||||||||||||| ||| || | |||| |||||||| | |||| |||||||||    
T  39203596 gtacaatacaccaaatggtgggaccccttcccggaccttgcatatgcgggagctttagtgcaccgggttgcccttta 39203672  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 46248039 - 46247953
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||||| |||| ||||||||    
T  46248039 ggtaagactgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgtaccgggttgcccttt 46247953  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 4349710 - 4349797
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  4349710 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 4349797  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 46991876 - 46991959
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 90  Q
    |||||| ||||||||| |||||| |||  |||||||||||||||||||||||||| |||||| |||||||| | |||| |||||    
T  46991876 ggtaaggctgtgtacaatacaccgaatggtgggaccccttcccggaccctgcgtatgtgggagctttagtgcaccgggttgccc 46991959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 42304264 - 42304223
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  42304264 tgggaccccttcccggaccctgcgtatgtgggagctttagtg 42304223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 8197146 - 8197201
Alignment:
Q  38 ggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||| ||||||||||||| || ||| |||||||||| |||| ||||||||    
T  8197146 ggaccccttctcggaccctgcgtatgttggagctttagtgtaccgggttgcccttt 8197201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 20999925 - 20999850
Alignment:
Q  19 gtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||| |||||||||| ||||| |||||||| | |||||||||| | |||| |||||||| | |||||||||||||    
T  20999925 gtacaatacaccaaatgatggggccccttccggcaccctgcgtacgcgggagctttagtgcaccgggctgcccttt 20999850  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 35117854 - 35117797
Alignment:
Q  8 ggtaagactgtgtacattacaccaaatatg---ggaccccttcccggaccctgcgtaa 62  Q
    |||||| ||||||||| ||||||||| |||   |||||||||||||||||||||||||    
T  35117854 ggtaaggctgtgtacaatacaccaaaaatgatgggaccccttcccggaccctgcgtaa 35117797  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 15505636 - 15505690
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 61  Q
    |||||||||| ||||| ||||||||||  ||||||||||||||| ||||||||||    
T  15505636 ggtaagactgcgtacaatacaccaaatggtgggaccccttcccgaaccctgcgta 15505690  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 10668328 - 10668385
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||| ||||||||| | |||| |||||||| | |||| ||||||||    
T  10668328 tgggaccccttcccggtccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10668385  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 18724631 - 18724582
Alignment:
Q  8 ggtaagactgtgtacattacaccaaatat-gggaccccttcccggaccct 56  Q
    |||||| ||||||||| |||||||||| | ||||||||||||||||||||    
T  18724631 ggtaaggctgtgtacaatacaccaaatcttgggaccccttcccggaccct 18724582  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 27474381 - 27474422
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  27474381 tgggaccccttcccggaccctgcgtatgcgggagctttagtg 27474422  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 35005226 - 35005283
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||  |||||||| | |||| ||||||||    
T  35005226 tgggaccccttcccggaccctgcgtatgcgggcgctttagtgcaccgggttgcccttt 35005283  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 50606504 - 50606561
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  50606504 tgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 50606561  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 31382298 - 31382214
Alignment:
Q  10 taagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||| ||| ||||| ||||||||||  ||||||||||||| ||||||||| || | |||| ||||| |||| |||| ||||||||    
T  31382298 taaggctgcgtacaatacaccaaatggtgggaccccttcctggaccctgcatatgcgggagctttactgtaccgggttgcccttt 31382214  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 45402179 - 45402251
Alignment:
Q  19 gtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 90  Q
    ||||| ||||||||||  |||||||||||||| ||||||||||| | |||| |||||||| | |||| |||||    
T  45402179 gtacaatacaccaaatggtgggaccccttcccagaccctgcgtatgcgggagctttagtgcaccgggttgccc 45402251  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 4516408 - 4516354
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccc 90  Q
    |||||||||||||||||||||||||| |||| | |||||||||| ||||||||||    
T  4516408 tgggaccccttcccggaccctgcgtatgtggaagctttagtgtaccgggctgccc 4516354  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 9671228 - 9671314
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  9671228 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 9671314  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 10546212 - 10546298
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  10546212 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10546298  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 8455402 - 8455316
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| |  ||| |||||||| | |||| ||||||||    
T  8455402 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgccggagctttagtgcaccgggttgcccttt 8455316  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 10543747 - 10543835
Alignment:
Q  8 ggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||| ||||   ||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  10543747 ggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 10543835  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 14444777 - 14444847
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||| ||||||||  ||||||||||  |||||||||||||||||||||||||| | |||| ||||||||    
T  14444777 ggtaaggctgtgtacgatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtg 14444847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 14530398 - 14530456
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  14530398 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 14530456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 34766333 - 34766390
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||| |||||||| |||||| | ||||||    
T  34766333 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaacgggtttcccttt 34766390  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 8575975 - 8576031
Alignment:
Q  38 ggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||||||||||||||||||||| |||||| |||||||| | | || |||||||||    
T  8575975 ggaccccttcccggaccctgcgtatgtgggagctttagtgcaccaggttgcccttta 8576031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 24059053 - 24059010
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgta 79  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||    
T  24059053 tgggacccctttccggaccctgcgtatgtgggagctttagtgta 24059010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 40762309 - 40762234
Alignment:
Q  19 gtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||| ||||||||||  |||||||| |||| |||||||||||| |||||| |||||||| | |||| ||||||||    
T  40762309 gtacaatacaccaaatggtgggaccctttcctggaccctgcgtatgtgggagctttagtgcaccgggttgcccttt 40762234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 17896309 - 17896379
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||| ||| ||||| || |||||||  |||||||||||| ||||||||||||| |||||| ||||||||    
T  17896309 ggtaaggctgcgtacaatataccaaatggtgggaccccttctcggaccctgcgtatgtgggagctttagtg 17896379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 36871541 - 36871626
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||| |||||||| | |||| |||||||| | |||| ||||||||    
T  36871541 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga-cctgcgtatgcgggagctttagtgcaccgggttgcccttt 36871626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 13245181 - 13245096
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 92  Q
    |||||| ||| ||||||||||| ||||  ||||||||||||||||||| ||| ||   |||| |||||||||| |||| |||||||    
T  13245181 ggtaaggctgcgtacattacactaaatggtgggaccccttcccggaccatgcatatacgggagctttagtgtatcgggttgccctt 13245096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 44643601 - 44643658
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||| ||||||||||| | |||| | |||||| | |||||||||||||    
T  44643601 tgggaccccttcccagaccctgcgtatgcgggagccttagtgcaccgggctgcccttt 44643658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 40579806 - 40579750
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 92  Q
    |||||||||||||||||||||| ||| | |||| |||||||| | |||| |||||||    
T  40579806 tgggaccccttcccggaccctgagtatgcgggagctttagtgcaccgggttgccctt 40579750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 33836544 - 33836487
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||| |||||||| |||||| ||||||||    
T  33836544 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaacgggttgcccttt 33836487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 25629098 - 25629184
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||||||||| ||||||||||  ||||||||||||||||||||| | || | |||| |||||||| | |||| ||||||||    
T  25629098 ggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctacatatgcgggagctttagtgcaccgggttgcccttt 25629184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 30690233 - 30690175
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||||||||||||||||||||||| | |||| |||||||| | | ||||||||||||    
T  30690233 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccaggctgcccttta 30690175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 35567219 - 35567305
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| |||||||||  |||||||||  ||||||||||||||| |||||||||  | |||| |||||||| | |||||||||||||    
T  35567219 ggtaaggctgtgtacaacacaccaaatggtgggaccccttcccgaaccctgcgtctgcgggagctttagtgcaccgggctgcccttt 35567305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 38755965 - 38755907
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  38755965 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 38755907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 44363187 - 44363129
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  44363187 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 44363129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 16911642 - 16911699
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||| ||||||| || |||| ||||||||    
T  16911642 tgggaccccttcccggaccctgcgtacgcgggagctttagtttaccgggttgcccttt 16911699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 20639715 - 20639658
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  20639715 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 20639658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 47482907 - 47482850
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||| |||| ||| |||| ||||||||||    
T  47482907 tgggaccccttcccggaccctgcgtatgcgggagctttggtgcaacgagctgcccttt 47482850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 14983912 - 14983955
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgta 79  Q
    |||||||||||||||||||||||||| | |||| ||||||||||    
T  14983912 tgggaccccttcccggaccctgcgtatgcgggagctttagtgta 14983955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 40553991 - 40553936
Alignment:
Q  39 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    ||||||||||||||||||||||| | |||| |||||||| | |||| |||||||||    
T  40553991 gaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 40553936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 5648307 - 5648361
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 61  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||||||    
T  5648307 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 5648361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 9832399 - 9832313
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || |  |||||| ||||| | |||| ||||||||    
T  9832399 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcaggaactctagtgcaccgggttgcccttt 9832313  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 11394930 - 11394988
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    ||||||||||| |||||||||||||| | |||| |||||||| | |||| |||||||||    
T  11394930 tgggacccctttccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 11394988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 11404657 - 11404715
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    ||||||||||| |||||||||||||| | |||| |||||||| | |||| |||||||||    
T  11404657 tgggacccctttccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttta 11404715  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 20225031 - 20225117
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  20225031 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 20225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 47528616 - 47528530
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||  || |||||| || ||||| | |||| ||||||||    
T  47528616 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgaatatgtgggagctctagtgcaccgggttgcccttt 47528530  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 51865124 - 51865038
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  |||| ||||||||||||||||||||| | |||| ||||| || | ||| |||||||||    
T  51865124 ggtaaggctgcgtacaatacaccaaatggtggggccccttcccggaccctgcgtatgcgggagctttattgcaccggactgcccttt 51865038  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 6430712 - 6430627
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 92  Q
    |||||| ||| ||||| ||||||||||  ||||||| |||||||||||||||||| | |||| |||||| | | |||| |||||||    
T  6430712 ggtaaggctgcgtacaatacaccaaatggtgggaccacttcccggaccctgcgtatgcgggagctttagcgcaccgggttgccctt 6430627  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 23501867 - 23501924
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  23501867 tgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 23501924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 32484311 - 32484368
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||||||||||||||||||||| || | |||| |||||||| | |||| ||||||||    
T  32484311 tgggaccccttcccggaccctgcatatgcgggagctttagtgcaccgggttgcccttt 32484368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 5306739 - 5306691
Alignment:
Q  19 gtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgg 66  Q
    ||||| ||||||||||  |||||||||||||||||||||||||| ||||    
T  5306739 gtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgtgg 5306691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 29207984 - 29207900
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccct 91  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||    
T  29207984 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgccct 29207900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 47441616 - 47441560
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaag 63  Q
    |||||| ||||||||| ||||||||||  | |||||||||||||||||||| |||||    
T  47441616 ggtaaggctgtgtacaatacaccaaatggttggaccccttcccggaccctgagtaag 47441560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 16957373 - 16957449
Alignment:
Q  18 tgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  16957373 tgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 16957449  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 3771388 - 3771474
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||||| ||| |||||||| |  |||||||||||||||||| ||| ||| |||||| |||||||| | |||||||||||||    
T  3771388 ggtaaggctgtgaacaatacaccaattggtgggaccccttcccggactctgtgtatgtgggagctttagtgcaccgggctgcccttt 3771474  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 24448939 - 24449025
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| |  ||| |||||||| | |||| ||||||||    
T  24448939 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcaggagctttagtgcaccgggttgcccttt 24449025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 29334474 - 29334531
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||| ||||||||||||||||| |||||| ||||| || | |||||||||||||    
T  29334474 tgggacccattcccggaccctgcgtatgtgggatctttaatgcaccgggctgcccttt 29334531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 38879661 - 38879718
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  38879661 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 38879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 19093894 - 19093948
Alignment:
Q  39 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||||| ||||||||||||||| || ||| |||||||| | |||||||||||||    
T  19093894 gacccctacccggaccctgcgtatgttggagctttagtgcaccgggctgcccttt 19093948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 30877621 - 30877563
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    ||||||||||||||||||||||| || |||||| || ||||| | |||| |||||||||    
T  30877621 tgggaccccttcccggaccctgcatatgtgggagctctagtgcaccgggttgcccttta 30877563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 32703471 - 32703557
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  32703471 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 32703557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 25622538 - 25622579
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  25622538 tgggaccccttcccggaccctgcgtatgcgggagctttagtg 25622579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 43574655 - 43574723
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttag 75  Q
    |||||| ||| ||||| || |||||||  |||||||||||||||||||||||||| | |||| ||||||    
T  43574655 ggtaaggctgcgtacaatataccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttag 43574723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 46891 - 46966
Alignment:
Q  19 gtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||| ||||||||||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  46891 gtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 46966  T

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Target: scaffold0187 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 10135 - 10085
Alignment:
Q  9 gtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 58  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  10135 gtaagactgcgtacaatacaccaaatagtgggaccccttcccggaccctgc 10085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 20463 - 20413
Alignment:
Q  9 gtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 58  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  20463 gtaagactgcgtacaatacaccaaatagtgggaccccttcccggaccctgc 20413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 5135375 - 5135321
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 61  Q
    |||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  5135375 ggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 5135321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 12625939 - 12626025
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||||||||  |||| ||||||||||  ||||||||| |||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  12625939 ggtaagactgcatacaatacaccaaatggtgggaccccctcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 12626025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 28817712 - 28817626
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| |||||| |||  |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  28817712 ggtaaggctgcgtacaatacacccaatggtgggaccccttcccggaccctgcgtatgcgggagctttagtgcatcgggttgcccttt 28817626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 29877143 - 29877227
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccct 91  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| | |||||| | | |||||||||    
T  29877143 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcgttagtgcaccaggctgccct 29877227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 2626571 - 2626622
Alignment:
Q  8 ggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgc 58  Q
    |||||||||| ||||| |||||||||| ||||||||||||||| ||||||||    
T  2626571 ggtaagactgcgtacaatacaccaaatgatgggaccccttcccagaccctgc 2626622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 13160750 - 13160837
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| ||| ||||   |||| |||||||||    
T  13160750 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcgccgggttgcccttta 13160837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 19729389 - 19729440
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgc 58  Q
    |||||| ||||||||| ||||||||||  |||||||||||||||||||||||    
T  19729389 ggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgc 19729440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 35261739 - 35261814
Alignment:
Q  19 gtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||| ||||||||||  ||||||||||||| |||||||||||| | |||| |||||||| | |||| ||||||||    
T  35261739 gtacaatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 35261814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 24365145 - 24365079
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaacttt 73  Q
    |||||| ||| | ||| ||||||||||  |||||||||||||||||||||||||| |||||| ||||    
T  24365145 ggtaaggctgcgaacaatacaccaaatggtgggaccccttcccggaccctgcgtatgtgggagcttt 24365079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 36720845 - 36720899
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 61  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||||||    
T  36720845 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 36720899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 39461048 - 39460994
Alignment:
Q  39 gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    ||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  39461048 gaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 39460994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 44530198 - 44530268
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||| |||||||||||| | |||| ||||||||    
T  44530198 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcctggaccctgcgtatgcgggagctttagtg 44530268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 45071313 - 45071398
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 92  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||| |||||| | |||| ||| |||| | |||| |||||||    
T  45071313 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccttgcgtatgcgggagcttcagtgcaccgggttgccctt 45071398  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 40444845 - 40444901
Alignment:
Q  37 gggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||| |||||||||||||| || ||| |||||||| | || ||||||||||    
T  40444845 gggaccccttgccggaccctgcgtatgttggagctttagtgcaccgagctgcccttt 40444901  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 42083755 - 42083699
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 92  Q
    ||||||||||||||| |||||| ||| |||||| |||||||| |  |||||||||||    
T  42083755 tgggaccccttcccgaaccctgtgtacgtgggagctttagtgcattgggctgccctt 42083699  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 7879687 - 7879773
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  |||||||||||||||||||||||||| | |||| ||| |||| | |||| ||||||||    
T  7879687 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgtatgcgggagcttcagtgcaccgggttgcccttt 7879773  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 32758308 - 32758394
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||||||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  32758308 ggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 32758394  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 35334902 - 35334848
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 61  Q
    |||||||||||||||| |||||| |||  ||||||||||||||||||||||||||    
T  35334902 ggtaagactgtgtacaatacaccgaatggtgggaccccttcccggaccctgcgta 35334848  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 11617674 - 11617589
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 92  Q
    |||||||||| ||||| ||||||||||  ||||||||||||| |||||||||||| |  ||| |||||||| | |||| |||||||    
T  11617674 ggtaagactgcgtacaatacaccaaatggtgggaccccttcctggaccctgcgtatgcaggacctttagtgcaccgggttgccctt 11617589  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 48735208 - 48735121
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| |||||||||    
T  48735208 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttta 48735121  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 1408506 - 1408560
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgta 61  Q
    |||||| ||||||||| |||| |||||  ||||||||||||||||||||||||||    
T  1408506 ggtaaggctgtgtacaatacagcaaatggtgggaccccttcccggaccctgcgta 1408560  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 19265863 - 19265948
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||| ||| | || |||||| |||||||| | |||||||||||||    
T  19265863 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga-cctacatatgtgggagctttagtgcaccgggctgcccttt 19265948  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 21172095 - 21172009
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  21172095 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 21172009  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 42391186 - 42391100
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  42391186 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 42391100  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 18747565 - 18747621
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgccctt 92  Q
    ||||||||||||| | |||||||||| | |||| |||||||| | ||||||||||||    
T  18747565 tgggaccccttcctgaaccctgcgtatgcgggagctttagtgcaccgggctgccctt 18747621  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 12885991 - 12886048
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||| ||||||||||| |||||| |||||||| | |||| ||||||||    
T  12885991 tgggaccccttcccagaccctgcgtatgtgggagctttagtgcaccgggttgcccttt 12886048  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 29355912 - 29355855
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||||||| | |||| |||||||| | |||| ||||||||    
T  29355912 tgggaccccttcccggaccctgcgtatgcgggagctttagtgcaccgggttgcccttt 29355855  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 1347011 - 1347097
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  1347011 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 1347097  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 1354843 - 1354757
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  1354843 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 1354757  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 10734962 - 10734904
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||| ||||||||||||||||||||| | |||| |||||||  | ||||||||||||||    
T  10734962 tgggcccccttcccggaccctgcgtatgcgggagctttagtccaccgggctgcccttta 10734904  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 26097207 - 26097293
Alignment:
Q  8 ggtaagactgtgtacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| |||||||||| | |||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  26097207 ggtaaggctgcgtacaatacaccaaatgaagggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 26097293  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 6808473 - 6808530
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||||||||||||||||||| ||| | |||| |||||||| | |||| ||||||||    
T  6808473 tgggaccccttcccggaccctgtgtatgcgggagctttagtgcaccgggttgcccttt 6808530  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 32728242 - 32728173
Alignment:
Q  8 ggtaagactgtgtacattacaccaaatatgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||||||||||||| || ||||||||  || ||| ||||| |||||| |||| | |||||||||||||    
T  32728242 ggtaagactgtgtacaatataccaaatagtggtccctttcccagaccctacgtatgcgggaactttagtg 32728173  T

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Target: scaffold0049 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 59026 - 59115
Alignment:
Q  8 ggtaagactgtgtacattacaccaaatatgg---gaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttta 94  Q
    |||||||||| ||||| ||||||||| ||||   ||||||||||| ||| ||||||| | |||| |||||||| | |||| |||||||||    
T  59026 ggtaagactgcgtacaatacaccaaaaatggtgggaccccttcccagactctgcgtatgcgggagctttagtgcatcgggttgcccttta 59115  T

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Target: scaffold1176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 1661 - 1603
Alignment:
Q  20 tacattacaccaaat-atgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||| |||||||||| ||||||||||||||||||||| ||||| | |||| ||||||||    
T  1661 tacaatacaccaaatgatgggaccccttcccggacccggcgtatgcgggagctttagtg 1603  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 48720 - 48634
Alignment:
Q  8 ggtaagactgtgtacattacaccaaata-tgggaccccttcccggaccctgcgtaagtgggaactttagtgtaacgggctgcccttt 93  Q
    |||||| ||| ||||| ||||||||||  ||||||||||||||||||||||| || | |||| || ||||| | |||| ||||||||    
T  48720 ggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcatatgcgggagctctagtgcaccgggttgcccttt 48634  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 10888 - 10929
Alignment:
Q  36 tgggaccccttcccggaccctgcgtaagtgggaactttagtg 77  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  10888 tgggaccccttcccggaccctgcgtatgcgggagctttagtg 10929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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