View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14725_high_3 (Length: 202)
Name: NF14725_high_3
Description: NF14725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14725_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 25583164 - 25583322
Alignment:
| Q |
1 |
actaaaacgaaaagataagttttttgagggaaataaagagaaaacttagaagaaaatgatgaatggtaggaaaagtggaagaaaatggtgtatatttcgt |
100 |
Q |
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| T |
25583164 |
actaaaacgaaaagataagttttttgagggaaataaagagaaaacttagaagaaaatgatgaatggtaggaaaagtggaagaaaatggtgtatatttcgt |
25583263 |
T |
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| Q |
101 |
tctcactattacttccactctcgttccctttgaatcccaaaaacccaaaacggttttca |
159 |
Q |
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| T |
25583264 |
tctcactattacttccactctcgttccctttgaatcccaaaaacccaaaacggttttca |
25583322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 25592980 - 25593025
Alignment:
| Q |
135 |
tcccaaaaacccaaaacggttttcaccttcccatttttcagtaagt |
180 |
Q |
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| T |
25592980 |
tcccaaaaggccaaaacggttttcaccttcccattttccagtaagt |
25593025 |
T |
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