View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14725_low_1 (Length: 609)
Name: NF14725_low_1
Description: NF14725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14725_low_1 |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 31662835 - 31663419
Alignment:
| Q |
1 |
aacaccaaacaagttgcgcctagcgcatgggacagaatgcaacaaaaaatttccaacttccaacatgagatttcaagacatatctcgacgtaatgttcga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31662835 |
aacaccaaacaagttgcgcctagcgcatgggacagaatgcaacaaaaaatttccaacttccaatatgagatttcaagacatatctcgacgtaatgttcga |
31662934 |
T |
|
| Q |
101 |
taaaattagcaattgataaatatgaaacaacataaaaacatatttttaattaagataacaagggtaaaattgagataaaaattataatattgaacgtagc |
200 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
31662935 |
taaaattaatagttgataaatatgaaacaacataaaaacatatttttaattaagataacaagggtaaaattgagataaaaattataatattgaaagtggc |
31663034 |
T |
|
| Q |
201 |
ttattaaaaaatgttacaagtccgtgaaaaaatttgttatcaaagaggtctgttttggtaatacgagcgtataacgaagcaaactcgaaaacttatctag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663035 |
ttattaaaaaatgttacaagtccgtgaaaaaatttgttatcaaagaggtctgttttggtaatacgagcgtataacgaagcaaactcgaaaacttatctag |
31663134 |
T |
|
| Q |
301 |
tcaaacagagccattagtcgtgcccttttcactagcatgttgtgtgttctgataatgatttttgtgtttactgtataatatgcagattgatattattgct |
400 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663135 |
tcaaacagagccattagtagtgcccttttcactagcatgttgtgtgttctgataatgatttttgtgtttactgtataatatgcagattgatattattgct |
31663234 |
T |
|
| Q |
401 |
agcctagtgagtgggagacttgtacgtgaaaggattggtcaagccatgttgaatgcggttcaaagtcaggtaattaaattgatttatccatattgagaga |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
31663235 |
agcctagtgagtgggagacttgtacgtgaaaggattggtcaagccatgttgaatgcggttcaaagtcaggtaattaaat----------acggtgagaga |
31663324 |
T |
|
| Q |
501 |
cataaattttggttatgaataattgaatatacac-aacttacttatattatgcc-ttaatttgctctctattctcagatgggtgcaggtgaaatg |
593 |
Q |
| |
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|||||||||||||||||||| | |||| |||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
31663325 |
cataaattttggttatgaattactgaaaatacacttgcttatatatattatgcctttaatttgctctccattctcagatgggtgcaggtgaaatg |
31663419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 29861452 - 29861408
Alignment:
| Q |
143 |
tttttaattaagataacaagggtaaaattgagataaaaattataa |
187 |
Q |
| |
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|||| ||||||||| |||||||||||||||||| |||||| |||| |
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|
| T |
29861452 |
ttttcaattaagattacaagggtaaaattgagagaaaaatgataa |
29861408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 32448143 - 32448181
Alignment:
| Q |
141 |
tatttttaattaagataacaagggtaaaattgagataaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32448143 |
tatttttaattaagataacaagggtaaaattgagataaa |
32448181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 10232549 - 10232510
Alignment:
| Q |
129 |
aacataaaaacatatttttaattaagataacaagggtaaa |
168 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||| |
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| T |
10232549 |
aacataaaaatatatttttaattaagattacaagggtaaa |
10232510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 9084533 - 9084440
Alignment:
| Q |
379 |
tatgcagattgatattattgctagcctagtgagtgggagacttgtacgtgaaaggattggtcaagccatgttgaatgcggttcaaagtcaggta |
472 |
Q |
| |
|
||||||||||||| |||||| |||| | ||||||| |||||||| ||||| ||||| |||| || ||| ||| ||| ||||||||||||||| |
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| T |
9084533 |
tatgcagattgatgttattgttagcttgttgagtggaagacttgtgcgtgagaggataggtcctgcaatgctgagtgctgttcaaagtcaggta |
9084440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 5657082 - 5657115
Alignment:
| Q |
148 |
aattaagataacaagggtaaaattgagataaaaa |
181 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
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|
| T |
5657082 |
aattaagataacaatggtaaaattgagataaaaa |
5657115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 2942038 - 2942002
Alignment:
| Q |
143 |
tttttaattaagataacaagggtaaaattgagataaa |
179 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| |
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|
| T |
2942038 |
ttttcaattaagattacaagggtaaaattgagataaa |
2942002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 6588450 - 6588414
Alignment:
| Q |
143 |
tttttaattaagataacaagggtaaaattgagataaa |
179 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| |
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|
| T |
6588450 |
tttttaattaagattacaagagtaaaattgagataaa |
6588414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 17902770 - 17902730
Alignment:
| Q |
143 |
tttttaattaagataacaagggtaaaattgagataaaaatt |
183 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||||| |
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| T |
17902770 |
ttttaaattaagataacaagggtgaaattgagagaaaaatt |
17902730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0495 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 9272 - 9233
Alignment:
| Q |
129 |
aacataaaaacatatttttaattaagataacaagggtaaa |
168 |
Q |
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|
|||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
9272 |
aacataaaaatatatttttaattaagattacaagggtaaa |
9233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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