View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14725_low_3 (Length: 366)
Name: NF14725_low_3
Description: NF14725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14725_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 8264878 - 8264530
Alignment:
| Q |
18 |
tggctaatgaaaggtttggtgtttgattttgttttaatggagttttgatgcttcatatgttgaatgcgagagatgagggcctttgagatatgaaaattaa |
117 |
Q |
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| T |
8264878 |
tggctaatgaaaggtttggtgtttgattttgttttaatggagttttgatgcttcatatgttgaatgcgagagatgagggcctttgagatatgaaaattaa |
8264779 |
T |
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| Q |
118 |
tcattactttataaaatgacacaaacctggtgtgccggtaaccatcattttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgtgtttg |
217 |
Q |
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| T |
8264778 |
tcattactttataaaatgacacaaacctggtgtgccggtaaccagcattttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgcgtttg |
8264679 |
T |
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| Q |
218 |
ttagagcgttagctcctagcacttctcccacatacaaaggatttcaaatttgagattccaagaactcaccgatcaaacggagcacatttcctcaagaatt |
317 |
Q |
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| T |
8264678 |
ttagagcgttagctcctagcacttctcccacatacaaaggattccaaatttgagattccaagaactcaccgatcaaatggagcacatttcctcaagaatt |
8264579 |
T |
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| Q |
318 |
gagaaaataaattcgaataaattgttgccaagacggaataaattgtcaa |
366 |
Q |
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| T |
8264578 |
gagaaaataaattcgaataaattgttgccaacacggaataagttgtcaa |
8264530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 38789138 - 38789063
Alignment:
| Q |
165 |
ttttaaaaagagtaacttggcttaatttagaagcatgtgttcatccgtgtttgttagagcgttagctcctagcact |
240 |
Q |
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| T |
38789138 |
ttttgaaaagagtaatgtggcttaatttagaagtgtgcgttcatctgagtttgttagagcatttgcgcctagcact |
38789063 |
T |
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