View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_high_14 (Length: 372)
Name: NF14726_high_14
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 36290578 - 36290236
Alignment:
| Q |
18 |
actcctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgata |
117 |
Q |
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| T |
36290578 |
actcctttgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgata |
36290479 |
T |
|
| Q |
118 |
atatctatgatcagattaaagatattattatggagtatataactcctgaaggaagtattatcttgaatgtcctttctgctactgttgattttacaacttg |
217 |
Q |
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| T |
36290478 |
atatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctcgaatgtcctttctgctactgttgattttacaacttg |
36290379 |
T |
|
| Q |
218 |
tgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290378 |
tgagtctattaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaag |
36290279 |
T |
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| Q |
318 |
gttactgctgatgatgttaacatcggtctaggttatgtctgtg |
360 |
Q |
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| T |
36290278 |
gttaccgctgatgatgttaacatcggtctaggttatgtctgtg |
36290236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 340
Target Start/End: Complemental strand, 36313054 - 36312739
Alignment:
| Q |
25 |
tgacattgattgtcaagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatcta |
124 |
Q |
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|||| |||||||| |||||||| || |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || || |
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| T |
36313054 |
tgactttgattgtgaagaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacattta |
36312955 |
T |
|
| Q |
125 |
tgatcagattaaagatattattatggagtatataactcctgaaggaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtct |
224 |
Q |
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|||||||||||| |||||||| ||||| |||||||||||||||| || |||||| ||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
36312954 |
tgatcagattaaggatattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtct |
36312855 |
T |
|
| Q |
225 |
attaggatgtcacaaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactg |
324 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| || |||||||| |||||||| ||||||||||| || |||| |
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| T |
36312854 |
attaggatgtcacagatggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactg |
36312755 |
T |
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| Q |
325 |
ctgatgatgttaacat |
340 |
Q |
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| T |
36312754 |
ctgatgatgttaacat |
36312739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 165 - 335
Target Start/End: Complemental strand, 33579845 - 33579675
Alignment:
| Q |
165 |
gaaggaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
264 |
Q |
| |
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|||| ||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||||||||||| |
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| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggt |
33579746 |
T |
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| Q |
265 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
335 |
Q |
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| T |
33579745 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
33579675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 33579949 - 33579889
Alignment:
| Q |
98 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatata |
158 |
Q |
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||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| |||| |
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| T |
33579949 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttata |
33579889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 335
Target Start/End: Original strand, 15997153 - 15997323
Alignment:
| Q |
165 |
gaaggaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
264 |
Q |
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|||| ||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||| ||||||| |
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| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggt |
15997252 |
T |
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| Q |
265 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
335 |
Q |
| |
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||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
15997253 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
15997323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 15997057 - 15997118
Alignment:
| Q |
98 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataa |
159 |
Q |
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||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| ||||| |
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| T |
15997057 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttataa |
15997118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 30575787 - 30575823
Alignment:
| Q |
299 |
tgaaggattgttggagaaggttactgctgatgatgtt |
335 |
Q |
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|||||||||||| ||||| |||||||||||||||||| |
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| T |
30575787 |
tgaaggattgtttgagaaagttactgctgatgatgtt |
30575823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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