View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14726_high_17 (Length: 316)
Name: NF14726_high_17
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 45934611 - 45934862
Alignment:
| Q |
19 |
accagggtggtattgttattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatactccaatgtccgagggaaaatact |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45934611 |
accagggtggtattggtattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacatctgaaatactccaatgtccgagggaaaatact |
45934710 |
T |
|
| Q |
119 |
tgagattgttcttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggtacaacaactc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45934711 |
tgagattgtttttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggt---acaactc |
45934807 |
T |
|
| Q |
219 |
gttttctttgctctacattaatttttgcaagttttaccccactgtctaactatct |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45934808 |
gttttctttgctctacattaatttttgcaagttttactccactgtctaactatct |
45934862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 15816849 - 15817095
Alignment:
| Q |
24 |
ggtggtattgttattccatctgatcaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatactccaatgtccgagggaaaatacttgaga |
123 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15816849 |
ggtggtattggtattccatctgataaaagctgggaatcttggtgggatgaagaaaatgaacacctgaaatactccaatgtccgagggaaaatacttgaga |
15816948 |
T |
|
| Q |
124 |
ttgttcttgcatgtcgtttctttatctatcaatatggaatcatctaccacctgaatattgcgcatcgtagcaaaaatattctggtacaacaactcgtttt |
223 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15816949 |
ttgttcttgcatgccgcttctttatctaccaatatggaattgtctaccacctgaatattgcgcgtcgtagcaaaaatattctggtacaacaacttgtttt |
15817048 |
T |
|
| Q |
224 |
ctttgctctacattaatttttgcaagttttaccccactgtctaacta |
270 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
15817049 |
ctttgttctaccttaatttttgcaaattttacccctccgtctaacta |
15817095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University