View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14726_high_2 (Length: 704)

Name: NF14726_high_2
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14726_high_2
NF14726_high_2
[»] chr2 (1 HSPs)
chr2 (12-686)||(1717270-1717947)


Alignment Details
Target: chr2 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 12 - 686
Target Start/End: Original strand, 1717270 - 1717947
Alignment:
Q  12 catcatcaccatcctctaatccaggattagcagatgtaatagactgcaattccaggctaaccagctcttgttttgtcttagtgtacttagcaataggatt 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717270 catcatcaccatcctttaatccaggattagcagatgtaatagactgcaattccaggctaaccagctcttgttttgtcttagtgtacttagcaataggatt 1717369  T
Q  112 atcccggttgtgctgacaactgatattcaacctggtgtttttcatgccaatttttaggcacctgaatgtttgcctgctatagtgaatgtgaaactatgct 211  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717370 atccctattgtgctgacaactgatattcaacctggtgtttttcatgccaatttttaggcacctgaatgtttgcctgctatagtgaatgtgaaactatgct 1717469  T
Q  212 gaaccaaaactgtgcttaaatcacatttgtttggcagaccgaaaacaatgagccagggaaggagaatctttctattgcatctaagataagatttagattt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717470 gaaccaaaactgtgcttaaatcacatttgtttggcagaccgaaaacaattagccagggaaggagaatctttctattgcatctaagataagatttagattt 1717569  T
Q  312 gtctttgaattatgatcacttgccgtcaagaaccagatgctgcaacctgttcttgattctctcttgcgttatagagaaagaagaaccatgtg---tattt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  1717570 gtctttgaattatgatcacttgccgtcaagaaccagatgctgcaacctgttcttgattctctcttgcgttatagagaaagaagaaccatgtgttttattt 1717669  T
Q  409 taagaagattatattctttgtatgcaacttgaaattgaatgtcatggaaattttgatttgattctttgctaattaattttatggtaggatatgagaatga 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717670 taagaagattatattctttgtatgcaacttgaaattgaatgtcatggaaattttgatttgattctttgctaattaattttatggtaggatatgagaatga 1717769  T
Q  509 gaggaatctggtctgaaaaatgttctgctgtgttgacgtgcttgtagtgacagtattcatttcttatttttctaccttccaagacctttatcactgattt 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717770 gaggaatctggtctgaaaaatgttctgctgtgttgacgtgcttgtagtgacagtattcatttcttatttttctaccttccaagacctttatcactgattt 1717869  T
Q  609 gattgaatgaggttctattttagcctctcatgctcacgtattcatttgctgatattctttgaattgcagttggaagat 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717870 gattgaatgaggttctattttagcctctcatgctcacgtattcatttgctgatattctttgaattgcagttggaagat 1717947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University