View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14726_high_23 (Length: 261)

Name: NF14726_high_23
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14726_high_23
NF14726_high_23
[»] chr4 (1 HSPs)
chr4 (1-162)||(9047611-9047771)
[»] chr2 (2 HSPs)
chr2 (1-106)||(22564540-22564644)
chr2 (70-135)||(24185763-24185828)
[»] chr6 (7 HSPs)
chr6 (167-261)||(17994938-17995032)
chr6 (167-261)||(17999382-17999476)
chr6 (174-261)||(17995019-17995106)
chr6 (191-261)||(17999463-17999533)
chr6 (167-207)||(17999355-17999395)
chr6 (220-251)||(17999293-17999324)
chr6 (31-104)||(21258127-21258200)
[»] scaffold0126 (2 HSPs)
scaffold0126 (28-135)||(38762-38869)
scaffold0126 (70-135)||(43737-43802)
[»] chr3 (1 HSPs)
chr3 (28-135)||(14960141-14960248)
[»] chr1 (1 HSPs)
chr1 (28-135)||(19280807-19280914)
[»] scaffold0490 (1 HSPs)
scaffold0490 (31-116)||(9978-10063)
[»] chr7 (2 HSPs)
chr7 (70-135)||(10012623-10012688)
chr7 (31-110)||(13043062-13043141)
[»] chr5 (1 HSPs)
chr5 (31-107)||(38622710-38622786)
[»] scaffold0664 (1 HSPs)
scaffold0664 (28-108)||(1950-2030)
[»] chr8 (1 HSPs)
chr8 (73-161)||(19196204-19196292)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 9047611 - 9047771
Alignment:
Q  1 acctcatatttctaaatctagccatgccagttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttggg 100  Q
    ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9047611 acctcatatttctcaatctagccatgcaa-ttttgccatctatttcttaatccccaaggaaccacagtgtttgatttgaaagccagaataaccagttggg 9047709  T
Q  101 agtctgattcaagccagagattccgaaaacctttgttgtatgcaatctcaattgcaatcata 162  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  9047710 agtttgattcaagccagagattcagaaaacctttgttgtatgcaatctcaattgtaatcata 9047771  T

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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 22564644 - 22564540
Alignment:
Q  1 acctcatatttctaaatctagccatgccagttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttggg 100  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22564644 acctcatacttctcaatctagccatgc-agttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttggg 22564546  T
Q  101 agtctg 106  Q
    ||||||    
T  22564545 agtctg 22564540  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 24185763 - 24185828
Alignment:
Q  70 tttgatttgaaagccagaataaccagttgggagtctgattcaagccagagattccgaaaacctttg 135  Q
    ||||| |||||||||| |||||| | ||||||||||||||||||||| | |||  |||||||||||    
T  24185763 tttgacttgaaagccaaaataactaattgggagtctgattcaagccaaacattttgaaaacctttg 24185828  T

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Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 17995032 - 17994938
Alignment:
Q  167 acatcatgttggataatactacaaataagtttgcaaaccaagcatgtatatggaaatatattcaaatatttaacattttacacatcatgttggat 261  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17995032 acatcatgttggataatacaacaaataagtttgcaaaccaagcatgtatatggaaatatattaaaatatttaacattttacacatcatgttggat 17994938  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 17999476 - 17999382
Alignment:
Q  167 acatcatgttggataatactacaaataagtttgcaaaccaagcatgtatatggaaatatattcaaatatttaacattttacacatcatgttggat 261  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17999476 acatcatgttggataatacaccaaataagtttgcaaacgaagcatgtatatggaaatatattcaaatatttaacattttacacatcatgttggat 17999382  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 17995106 - 17995019
Alignment:
Q  174 gttggataatactacaaataagtttgcaaaccaagcatgtatatggaaatatattcaaatatttaacattttacacatcatgttggat 261  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17995106 gttggataatacaacaaataagtttgcaaaccaagcatgtatatggaaatatattaaaatatttaacattttacacatcatgttggat 17995019  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 17999533 - 17999463
Alignment:
Q  191 ataagtttgcaaaccaagcatgtatatggaaatatattcaaatatttaacattttacacatcatgttggat 261  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17999533 ataagtttgcaaaccaagcatgtatatggaaacatattcaaatatttaacattttacacatcatgttggat 17999463  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 17999395 - 17999355
Alignment:
Q  167 acatcatgttggataatactacaaataagtttgcaaaccaa 207  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  17999395 acatcatgttggataatacaacaaataagtttgcaaaccaa 17999355  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 251
Target Start/End: Complemental strand, 17999324 - 17999293
Alignment:
Q  220 aaatatattcaaatatttaacattttacacat 251  Q
    ||||||||||||||||||||||||||||||||    
T  17999324 aaatatattcaaatatttaacattttacacat 17999293  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 21258127 - 21258200
Alignment:
Q  31 ttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttgggagtc 104  Q
    |||| ||| |||||||||| |||||| ||||| ||| |||| ||||||||||| ||||| |||| ||| |||||    
T  21258127 ttttcccacctatttcttagtccccagggaacgacagtgttggatttgaaagcaagaatcaccaattgcgagtc 21258200  T

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Target: scaffold0126 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 38869 - 38762
Alignment:
Q  28 cagttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttgggagtctgattcaagccagagattccgaa 127  Q
    |||||||||||||| ||||| |  | ||||||||||||    ||||| |||||||||| |||||| | ||||||||||||||||||||| | |||  |||    
T  38869 cagttttgccatctgtttctgaggcaccaaggaaccactgactttgacttgaaagccaaaataactaattgggagtctgattcaagccaaacattttgaa 38770  T
Q  128 aacctttg 135  Q
    ||||||||    
T  38769 aacctttg 38762  T

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Target: scaffold0126; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 43802 - 43737
Alignment:
Q  70 tttgatttgaaagccagaataaccagttgggagtctgattcaagccagagattccgaaaacctttg 135  Q
    ||||| |||||||||| |||||| | ||||||||||||||||||||| | |||  |||||||||||    
T  43802 tttgacttgaaagccaaaataactaattgggagtctgattcaagccaaacattttgaaaacctttg 43737  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 14960248 - 14960141
Alignment:
Q  28 cagttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttgggagtctgattcaagccagagattccgaa 127  Q
    |||||||||||||| ||||| |  | ||||||||||||    ||||| |||||||||| |||||| | ||||||||||||||||||||| | |||  |||    
T  14960248 cagttttgccatctgtttctgaggcaccaaggaaccactgactttgacttgaaagccaaaataactaattgggagtctgattcaagccaaacattttgaa 14960149  T
Q  128 aacctttg 135  Q
    ||||||||    
T  14960148 aacctttg 14960141  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 19280807 - 19280914
Alignment:
Q  28 cagttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttgggagtctgattcaagccagagattccgaa 127  Q
    |||||||||||||| ||||| |  | ||||||||||||    ||||| |||||||||| | |||| | ||||||||||||||||||||| | |||  |||    
T  19280807 cagttttgccatctgtttctgagacaccaaggaaccactgaatttgacttgaaagccaaattaactaattgggagtctgattcaagccaaacattttgaa 19280906  T
Q  128 aacctttg 135  Q
    ||||||||    
T  19280907 aacctttg 19280914  T

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Target: scaffold0490 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 10063 - 9978
Alignment:
Q  31 ttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttgggagtctgattcaagcca 116  Q
    |||| ||| |||||||||| |||||||||||| ||| |||| ||||||||||| ||||| |||| ||| || || ||||| |||||    
T  10063 ttttcccacctatttcttagtccccaaggaacgacactgttggatttgaaagcaagaattaccaattgcgaatccgattccagcca 9978  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 10012688 - 10012623
Alignment:
Q  70 tttgatttgaaagccagaataaccagttgggagtctgattcaagccagagattccgaaaacctttg 135  Q
    ||||| |||||||||| |||||| | ||||||||||||||||||||| | |||  |||||||||||    
T  10012688 tttgacttgaaagccaaaataactaattgggagtctgattcaagccatacattttgaaaacctttg 10012623  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 13043141 - 13043062
Alignment:
Q  31 ttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttgggagtctgattc 110  Q
    |||| ||| ||||||||||| |||||||||||||||    | || |||||||||| ||| |||||||| |||||||||||    
T  13043141 ttttcccacctatttcttaaaccccaaggaaccacagaaatcgaattgaaagccataatcaccagttgagagtctgattc 13043062  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 38622786 - 38622710
Alignment:
Q  31 ttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttgggagtctga 107  Q
    |||| ||| |||||||||||||||||||||||||||    |||| |||||||||| ||| |||||||| || |||||    
T  38622786 ttttcccacctatttcttaatccccaaggaaccacagaaattgaattgaaagccataatcaccagttgagaatctga 38622710  T

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Target: scaffold0664 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 2030 - 1950
Alignment:
Q  28 cagttttgccatctatttcttaatccccaaggaaccacaatgtttgatttgaaagccagaataaccagttgggagtctgat 108  Q
    |||||||||||||| ||||| |  | ||||||||||||    ||||| |||||||||| |||||| | |||||||||||||    
T  2030 cagttttgccatctgtttctgaggcaccaaggaaccactgactttgacttgaaagccaaaataactaattgggagtctgat 1950  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 19196204 - 19196292
Alignment:
Q  73 gatttgaaagccagaataaccagttgggagtctgattcaagccagagattccgaaaacctttgttgtatgcaatctcaattgcaatcat 161  Q
    |||||||| ||||  ||||||||||| || || | ||| ||||| |||||   | |||| |||||||||||||||||||||||| ||||    
T  19196204 gatttgaatgccaagataaccagttgtgaatcagtttccagccaaagattagtataaccattgttgtatgcaatctcaattgcagtcat 19196292  T

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