View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_high_27 (Length: 252)
Name: NF14726_high_27
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 30713698 - 30713936
Alignment:
| Q |
13 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcagacgagaaacaactatgaacatataatttcatcgtcttttgagagtcta |
112 |
Q |
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| T |
30713698 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcaaacgagaaacaactatgaacatataatttcatcgtgttttgagagtcta |
30713797 |
T |
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| Q |
113 |
cttcaacaaccaaagaaagatcacaaactcaccaacaaagttgaggtaaataatagtccccaaagttttcagcaatgacgataacaagattaaattttgc |
212 |
Q |
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||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
30713798 |
cttcaacaaacaaacaaagatcacaaactccccaacaaagttgaggtaaataataatccccaaagttttcagcaataacgataactagattaaattttgc |
30713897 |
T |
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| Q |
213 |
aacagtaaaatagtaaatggtcaaatgaatgtgatgttc |
251 |
Q |
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| T |
30713898 |
aacagtaaaatagtaaatggtcaaatgaatgtgatgttc |
30713936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 30721475 - 30721713
Alignment:
| Q |
13 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcagacgagaaacaactatgaacatataatttcatcgtcttttgagagtcta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30721475 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcaaacgagaaacaactatgaacatataatttcatcgtgttttgagagtcta |
30721574 |
T |
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| Q |
113 |
cttcaacaaccaaagaaagatcacaaactcaccaacaaagttgaggtaaataatagtccccaaagttttcagcaatgacgataacaagattaaattttgc |
212 |
Q |
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| T |
30721575 |
cttcaacaaacaaacaaagatcacaaactccccaacaaagttgaggtaaataataatccccaaagttttcagcaataacgataactagattaaattttgc |
30721674 |
T |
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| Q |
213 |
aacagtaaaatagtaaatggtcaaatgaatgtgatgttc |
251 |
Q |
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| T |
30721675 |
aacagtaaaatagtaaatggtcaaatgaatgtgatgttc |
30721713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 30730964 - 30731078
Alignment:
| Q |
13 |
caaaggtggtggagaaatcgataaaagatagtggactagagagcatatgcagacgagaaacaactatgaacatataatttcatcgtcttttgagagtcta |
112 |
Q |
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|||||||| ||||||||||||||||||| ||||| |||||| |||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
30730964 |
caaaggtgatggagaaatcgataaaagagagtgggttagagatcatatgtagatgagaaacaactatgaatatataatttcatcgtggtttgagagtcta |
30731063 |
T |
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| Q |
113 |
cttcaacaaccaaag |
127 |
Q |
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||||||||| ||||| |
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| T |
30731064 |
cttcaacaaacaaag |
30731078 |
T |
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