View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14726_high_34 (Length: 227)
Name: NF14726_high_34
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_high_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 24767995 - 24767778
Alignment:
| Q |
1 |
ctttaccactttagctccgatgcgattatttaccagaagttgttttactatcactttaaaaagataagtactttaatttcctacaatagtactgaatcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24767995 |
ctttaccactttagctccgatgcgattatttaccagaagttgttttactatcactttaaaaagataagtactttaatttcctacaatagtactgaatcag |
24767896 |
T |
|
| Q |
101 |
atactacacagaaactaaagtgtcaaattaaagtgcaatccgcacatttcttttttgcctaataagcaacacacatactttctttaattgtctttctcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24767895 |
atactacacagaaactaaagtgtcaaattaaagttcaatccgcacatttcttttttgcctaataagcaacacacatactttctttaattgtctttctcct |
24767796 |
T |
|
| Q |
201 |
ctcaattttttactctaa |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24767795 |
ctcaattttttactctaa |
24767778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 51499749 - 51499915
Alignment:
| Q |
1 |
ctttaccactttagctccgatgcgattattta-ccagaagttgttttactatcactttaaaaagataagtactttaatttcctacaatagtactgaatca |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
51499749 |
ctttaccactttagctccgatgtgattatttaaccagatgttgttttactatcactttaaaaaaataactgctttaatttcctacaatagtactgaatca |
51499848 |
T |
|
| Q |
100 |
gatactacacagaaactaaagtgtcaaattaaagtgcaatccgcacatttcttttttgcctaataagcaaca |
171 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51499849 |
gatactaaacagaaactaaagtgtc-----aaagtgcaatccgcacatttctttttggcctaataagcaaca |
51499915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University