View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_high_35 (Length: 227)
Name: NF14726_high_35
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_high_35 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 15025131 - 15025011
Alignment:
| Q |
107 |
tgagagttaacctgtgattggtttaaaaaagaccacaaatctgtttaatctcattgcatatgactatatgagcaatatacaatagtaactcccataaatc |
206 |
Q |
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| T |
15025131 |
tgagagttaacctgtgattggtttaaaaaagaccacaaatctgtttaatctcattgcatatgactatatgagcaatatacaatagtaactcccataaatc |
15025032 |
T |
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| Q |
207 |
ttaaacgatagaagttccctt |
227 |
Q |
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| T |
15025031 |
ttaaacgatagaagttccctt |
15025011 |
T |
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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 15026793 - 15026702
Alignment:
| Q |
14 |
ccagcgtcaaagcgagagaattatgagaattaataactaatctaaaagcatgatcatgcactatcaaacaagtatcaattgtcacttagcct |
105 |
Q |
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| T |
15026793 |
ccagcgtcaaagagagagaattatgagaattaataactaatctaaaagcatgatcatgcactatcaaacaagtatcaattgtcacttagcct |
15026702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 15014597 - 15014477
Alignment:
| Q |
107 |
tgagagttaacctgtgattggtttaaaaaagaccacaaatctgtttaatctcattgcatatgactatatgagcaatatacaatagtaactcccataaatc |
206 |
Q |
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||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||| | |||||| |
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| T |
15014597 |
tgagagttagcttgtgattgctttaaaaaagaccacaaatctgtttaatctcattgcatatgactatattagcaatagaaaatggtaacttacttaaatc |
15014498 |
T |
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| Q |
207 |
ttaaacgatagaagttccctt |
227 |
Q |
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| T |
15014497 |
ttaaaagatagaagttccctt |
15014477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 15002899 - 15002965
Alignment:
| Q |
159 |
attgcatatgactatatgagcaatatacaatagtaactcccataaatcttaaacgatagaagttccc |
225 |
Q |
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| T |
15002899 |
attgcataggaccatgtaagcagtatacaatagtaactcccttaaatcttaaaagataaaaggtccc |
15002965 |
T |
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