View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14726_low_1 (Length: 794)

Name: NF14726_low_1
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14726_low_1
NF14726_low_1
[»] chr8 (3 HSPs)
chr8 (29-397)||(41311027-41311395)
chr8 (34-386)||(43164710-43165062)
chr8 (676-776)||(41311412-41311512)
[»] chr7 (10 HSPs)
chr7 (34-321)||(30165608-30165883)
chr7 (29-376)||(30124981-30125328)
chr7 (485-576)||(30131424-30131515)
chr7 (132-247)||(28180965-28181080)
chr7 (517-644)||(30125466-30125593)
chr7 (162-272)||(30131068-30131178)
chr7 (162-268)||(30120068-30120174)
chr7 (713-767)||(29856632-29856686)
chr7 (340-385)||(28180514-28180559)
chr7 (31-64)||(30130934-30130967)
[»] chr2 (2 HSPs)
chr2 (147-380)||(21426470-21426703)
chr2 (301-385)||(21430161-21430244)
[»] scaffold1051 (1 HSPs)
scaffold1051 (302-370)||(1971-2039)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 29 - 397
Target Start/End: Original strand, 41311027 - 41311395
Alignment:
Q  29 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 128  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311027 attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 41311126  T
Q  129 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311127 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 41311226  T
Q  229 aatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 328  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311227 aaccagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 41311326  T
Q  329 tgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagataccatgtatttttat 397  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41311327 tgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagataccatgtatttttat 41311395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 34 - 386
Target Start/End: Original strand, 43164710 - 43165062
Alignment:
Q  34 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa 133  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| |||||||||||   | | |||  ||    
T  43164710 gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa 43164809  T
Q  134 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca 233  Q
    |||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| ||    
T  43164810 tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca 43164909  T
Q  234 gccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttc 333  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| | ||  ||| ||||||||  |||||||||||||||||||||||||||||||||    
T  43164910 gccaatgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttc 43165009  T
Q  334 ccattgattacctctcaatgagaacatctccaagtcaattgaactagatacca 386  Q
    ||||| |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  43165010 ccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacca 43165062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 676 - 776
Target Start/End: Original strand, 41311412 - 41311512
Alignment:
Q  676 tagagcttcatgagcataagctttcttgaaaagataagttttcaccgacatgattctatgtgtggatgatgcagcaagttgaaaatgtgaagatgccaaa 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311412 tagagcttcatgagcataagctttcttgaaaagataagttttcaccgacatgattctatgtgtggatgatgcagcaagttgaaaatgtgaagatgccaaa 41311511  T
Q  776 t 776  Q
    |    
T  41311512 t 41311512  T

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Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 34 - 321
Target Start/End: Complemental strand, 30165883 - 30165608
Alignment:
Q  34 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa 133  Q
    |||||||||||||||||||||||||| ||||| | |||||| |||||||||||| |||||||    |||||||| ||||||||||||||               
T  30165883 gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- 30165795  T
Q  134 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca 233  Q
     ||| | || || ||| ||| |||||  |||||| || ||||  ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||    
T  30165794 -cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca 30165696  T
Q  234 gccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaa 321  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||  ||| |||||||||||| |||||||||    
T  30165695 gccaatgaatagaaccattgaagaacgacccaactctgggaccaccttcagagcatgcagggttcctataaggcaaatgagaatcaaa 30165608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 29 - 376
Target Start/End: Original strand, 30124981 - 30125328
Alignment:
Q  29 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 128  Q
    |||| |||||| |||||||||| |||||||| || |  |||||| | | |||||| ||| |||||||  |||||||| | ||||||||||  |  || ||    
T  30124981 attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag 30125080  T
Q  129 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 228  Q
    |||||||  |||||||| ||| ||| |||||  | ||||||| ||||  |||||||||||||||||||| |||||||||| | |  |||| || || ||     
T  30125081 agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatg 30125180  T
Q  229 aatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 328  Q
    || ||||||||||||||  |||||||||||| ||||||||||||| |  || |||||||  ||||||||| |||||||||||| ||||||||||||||||    
T  30125181 aaccagccaatgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatt 30125280  T
Q  329 tgttcccattgattacctctcaatgagaacatctccaagtcaattgaa 376  Q
    |  ||||| | |||| ||||||||| ||| ||||||||||||||||||    
T  30125281 tcctcccacttattagctctcaatgggaaaatctccaagtcaattgaa 30125328  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 485 - 576
Target Start/End: Original strand, 30131424 - 30131515
Alignment:
Q  485 ataggagacagaggtatttgcttgttgacacgagtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctaca 576  Q
    |||||||| ||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  30131424 ataggagagagaggtatttgtttattgacaccagtggatggattccataggtagaggcatttgtaaacgtccaataatagaaaccctctaca 30131515  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
Q  132 aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat 231  Q
    |||| ||||||||| ||||||| |||||  | ||||||| |||||||||||||||||||||||||||||||||| | ||||  |||| || || |||||     
T  28180965 aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac 28181064  T
Q  232 cagccaatgaatagaa 247  Q
    ||||||||||||||||    
T  28181065 cagccaatgaatagaa 28181080  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 517 - 644
Target Start/End: Original strand, 30125466 - 30125593
Alignment:
Q  517 agtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctacacgaacctataatatcaatgcaggattggggaggcacaaaa 616  Q
    ||||||||||||||| ||||| |||||| ||| |||||||||||||||||| ||||||||||||||| |||| | |    | ||| || |||||| ||||    
T  30125466 agtggatggattccaaaggtagaggcatgtgttacagtccaataatagaaaccctctacacgaacctctaattttaggataagatcggtgaggcaaaaaa 30125565  T
Q  617 tcaaggcttagtgaatgataagcagaat 644  Q
     |||||  ||||||||||||||||||||    
T  30125566 ccaaggtgtagtgaatgataagcagaat 30125593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 30131068 - 30131178
Alignment:
Q  162 tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga 261  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||| ||   |||| || || ||||| ||||||||||||||  |||||||||||| |    
T  30131068 tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaacaa 30131167  T
Q  262 cccaactctgg 272  Q
    ||| |||||||    
T  30131168 cccgactctgg 30131178  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 30120068 - 30120174
Alignment:
Q  162 tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga 261  Q
    ||||||| | |||| |||||||||||||||||||||||||||||| ||| |  |||| || || || || || |||||||||||  |||||||||||| |    
T  30120068 tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaa 30120167  T
Q  262 cccaact 268  Q
    |||||||    
T  30120168 cccaact 30120174  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 767
Target Start/End: Complemental strand, 29856686 - 29856632
Alignment:
Q  713 gttttcaccgacatgattctatgtgtggatgatgcagcaagttgaaaatgtgaag 767  Q
    ||||||||| |||| |||||||| | || |||||||||||| |||||||||||||    
T  29856686 gttttcaccaacataattctatgcgagggtgatgcagcaagatgaaaatgtgaag 29856632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
Q  340 attacctctcaatgagaacatctccaagtcaattgaactagatacc 385  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||    
T  28180514 attagctctcaatgagaaaatctctaattcaattgaactagatacc 28180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
Q  31 tgtgtattcttgcatcacccatatcttaagtgta 64  Q
    ||||||||||||||||||||||||||||| ||||    
T  30130934 tgtgtattcttgcatcacccatatcttaactgta 30130967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 147 - 380
Target Start/End: Complemental strand, 21426703 - 21426470
Alignment:
Q  147 catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaataga 246  Q
    ||||||| |||||  ||||||||| |||  ||||||||||||||| ||||||||||||||||   |  |||| |  || || || ||||||||||||||     
T  21426703 catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagc 21426604  T
Q  247 accattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacct 346  Q
     ||||| ||||||||||| |||||||| | |   | | ||    ||||| |  |||||||||||| |||| ||| ||||||||||| ||||| || | ||    
T  21426603 cccatttaagaacgacccgactctgggccgaaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatgagct 21426504  T
Q  347 ctcaatgagaacatctccaagtcaattgaactag 380  Q
    ||||||||||| |||| |||||||||||||||||    
T  21426503 ctcaatgagaaaatcttcaagtcaattgaactag 21426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 301 - 385
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
Q  301 ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc 385  Q
    ||||||||||| |||| ||| |||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc 21430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 1971 - 2039
Alignment:
Q  302 taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca 370  Q
    |||||||||  |||| ||||||||||||||| ||| | |||| ||||||||||||| ||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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