View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_11 (Length: 469)
Name: NF14726_low_11
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 38027777 - 38028239
Alignment:
| Q |
1 |
cgaataatataatacttgattcaacccaaaaagaatataatacttgtaa-gatattcagcatttttatgtgctgatttctggtggcctctgcatgattta |
99 |
Q |
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| T |
38027777 |
cgaataatataatacttgattcaacccaaaaagaatataatacttgtaaagatattcagcatttttatgtgctgatttctggtggcctctgcatgattta |
38027876 |
T |
|
| Q |
100 |
tatataatatttttaag-aagtggctggcttgctaaaagaactttgaattgctcgatcgtctactattctcccttgaaaatcaaagtaggcatatattac |
198 |
Q |
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| T |
38027877 |
tatataatatttttaaggaagtggttggcttgctacaagaactttgaattgctcgatcgtctactattctcccttgaaaatcaaagtaggcatatattac |
38027976 |
T |
|
| Q |
199 |
atttaaaagaaagttaacactctagcactgtctacacgagtc-ttaactcaattaataaaaaatattaaaattgataagtcggacttttaatagctttgt |
297 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||||| | |
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| T |
38027977 |
atgtaaaagaaagttaacactctagcactctctacacgagtctttaactcaattaataaaaaatattgaaattgataagtcaggcttttaatagctttct |
38028076 |
T |
|
| Q |
298 |
aatttcgtctgtctat------nnnnnnnncactcttatacgctaaag-ttttatttggtatatacttatattcaattattcaatagcgtgtcataattt |
390 |
Q |
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|||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028077 |
aatttcgtctgtctataaaaaaaaaaaaaacactc-tatacgctaaagtttttatttggtatatacttatattcaattattcaatagcgtgtcataattt |
38028175 |
T |
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| Q |
391 |
tatatcaatttggaaatgtaaaaaatttatgttgacggtaattgttgctaggcataagctttgt |
454 |
Q |
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| T |
38028176 |
tatatcaatttggaaatgtaaaaaatttatgttgacggtaattgttgctaggcataagctttgt |
38028239 |
T |
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