View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_14 (Length: 388)
Name: NF14726_low_14
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 32013350 - 32013701
Alignment:
| Q |
20 |
attgaggatttggcacatttcagattatacatgtcaaattagtatt-agattgtttcagattttattttctaaatggtatttaaacaagatttgaataaa |
118 |
Q |
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| T |
32013350 |
attgaggatttgacacattcgagattatacatgtcaaactagtatttagattgtttcatattttattttttaaatggtatttaaacaagatttgaataaa |
32013449 |
T |
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| Q |
119 |
ccaaagcaacatgccnnnnnnnn----ctaaaatattaaggaattcaatttatataatctaaaacttatgaaaaatggttcagattatataatccaaact |
214 |
Q |
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| T |
32013450 |
ccaaagcaacatgcctttttttttcttctaaaatttgaaagaattcaatttatataatctaaaacttatgaaaaatagttcagattatataatccaaact |
32013549 |
T |
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| Q |
215 |
atatatcttggaaatgttggatggcacgcaagaagtgagaaggtgggaaaagaaattcctaag--aaaaagttgg-aaaaaattccatt------ttgta |
305 |
Q |
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| T |
32013550 |
atgtattttgaaaatgttggatggcacgcgagaagtgagaaggtgggaaaagaaattcctaagaaaaaaagttggaaaaaaattccttttgtaaattgta |
32013649 |
T |
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| Q |
306 |
aatatatattttggcccaaacacaagcccaaaacaatataggttaacaaacg |
357 |
Q |
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| T |
32013650 |
aatatatattttggcccaaacacaagcccaaaacaatataggttaacaaacg |
32013701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 12645745 - 12645805
Alignment:
| Q |
59 |
tagtattagattgtttcagattttattttctaaatggtatttaaacaagatttgaataaac |
119 |
Q |
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| T |
12645745 |
tagtattagattgtttcgaattttattctcaaaatcgtatttaaacaggatttggataaac |
12645805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 26188102 - 26188146
Alignment:
| Q |
164 |
ttatataatctaaaacttatgaaaaatggttcagattatataatc |
208 |
Q |
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| T |
26188102 |
ttatataattcaaaacttgtgaaaaatggttcagattataaaatc |
26188146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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