View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_15 (Length: 375)
Name: NF14726_low_15
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_15 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 195 - 375
Target Start/End: Complemental strand, 24642119 - 24641939
Alignment:
| Q |
195 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
294 |
Q |
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| T |
24642119 |
gttcaatcaaaacagaatgattacgcgtaattacaaagcttacttttttctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
24642020 |
T |
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| Q |
295 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagct |
375 |
Q |
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| T |
24642019 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagct |
24641939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 195 - 375
Target Start/End: Complemental strand, 24693488 - 24693308
Alignment:
| Q |
195 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
294 |
Q |
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| T |
24693488 |
gttcaatcaaaacagaatgattacgcataattacaaagcttattttattttgatgggtttgttggtgaatttagcttcaactaagtatgaagctttaaac |
24693389 |
T |
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| Q |
295 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagct |
375 |
Q |
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| T |
24693388 |
actaacccatttaaaccactatctccaactatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagct |
24693308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 24642303 - 24642185
Alignment:
| Q |
11 |
ccaagaatatcctcggctcctgtcagccaaccatgaccaggatgactattcaaataattaactgactttatccttctctgtgttttattaaaccttccca |
110 |
Q |
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| T |
24642303 |
ccaataatatcctcggctcctgtcagccaaccatgaccaggatgactattcaaataattaactgactttatccttctctgtgttttatcaaaccttccca |
24642204 |
T |
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| Q |
111 |
ccattgtccactaacaatg |
129 |
Q |
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| T |
24642203 |
ccattgtccactaacaatg |
24642185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 24694574 - 24694459
Alignment:
| Q |
195 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
294 |
Q |
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| T |
24694574 |
gttcaatcaaaacagaatgattacgcgtaattacaaagcttattttattctgatgggtttgttggtgtctttagcttcaactaagtatgaagctttaaac |
24694475 |
T |
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| Q |
295 |
accaacccgtttcaac |
310 |
Q |
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| T |
24694474 |
actaacccgtttcaac |
24694459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 233 - 375
Target Start/End: Original strand, 24733205 - 24733353
Alignment:
| Q |
233 |
cttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaacacca------acccgtttcaaccactatccccaacaat |
326 |
Q |
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| T |
24733205 |
cttattttattctaatgggcatgttggtggctttagctgcaacgaagtatgaagctttaaaaactagtactaacccatttcaaccatcatccccaacttt |
24733304 |
T |
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| Q |
327 |
gttgctgtttttgacatctctatgttgtcacgcagtttcatccacagct |
375 |
Q |
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| T |
24733305 |
gttgctgtttttgacatctctatgttgtcacacagtttcatccacagct |
24733353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 375
Target Start/End: Complemental strand, 24648887 - 24648706
Alignment:
| Q |
198 |
caatcaaaacaaaatgattacgcgtaattac---aaagcttactttattctgatgggtttgttggtgactttagcttcaact-aagtatgaagctttaaa |
293 |
Q |
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| T |
24648887 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
24648788 |
T |
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| Q |
294 |
caccaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagct |
375 |
Q |
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| T |
24648787 |
cactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagct |
24648706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 24695507 - 24695466
Alignment:
| Q |
51 |
gatgactattcaaataattaactgactttatccttctctgtg |
92 |
Q |
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| T |
24695507 |
gatgactattcaaataattaacggactttatccttctttgtg |
24695466 |
T |
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