View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_22 (Length: 294)
Name: NF14726_low_22
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 45935209 - 45934927
Alignment:
| Q |
1 |
cttgagaatacggaacttgagctgaaagttggtgccaaatcttcgtttacccatgaaaagcatctgatgcccataagaaaattcatgcaaacatcagaaa |
100 |
Q |
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| T |
45935209 |
cttgagaatacggaacttgagctgaaagttggtgccaaatcttcgtttacccatggaaagcatctgatgcccataagaaaattcatgcaaacatcagaaa |
45935110 |
T |
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| Q |
101 |
ttatattttttatactataagtttgactatgcaacagctacaattgtctatactaaagctcgtctagcttgattgaaaagaaatgttttatgactaaaa- |
199 |
Q |
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| T |
45935109 |
ttatattttttatactataagtttgactatgcaacagctacaattgtctatactaaagctcgtctagcttgattgaaaagaaatgttttatgactaaaat |
45935010 |
T |
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| Q |
200 |
-----------tttgtattttattatgttttaatttaggcaaataggaatggttttgcatatacaaaatcacagacctttaag |
271 |
Q |
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| T |
45935009 |
ttgaactaaaatttgtattttattatgttttaatttaggcaaataggaatggttttgcatatacaaaatcacatacctttaag |
45934927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15817438 - 15817207
Alignment:
| Q |
1 |
cttgagaatacggaacttgagctgaaagttggtgccaaatcttcgtttacccatgaaaagcatctgatgcccataagaaaattcatgcaaacatcagaaa |
100 |
Q |
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|||||||||||||||| |||||||||||| ||| |||||||||||| |||||||| ||| |||||||| |||||| |||| ||||| ||||||||||||| |
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| T |
15817438 |
cttgagaatacggaacatgagctgaaagtcggtaccaaatcttcgtctacccatggaaaccatctgatacccatatgaaagttcatccaaacatcagaaa |
15817339 |
T |
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| Q |
101 |
ttatattt-tttatactataagtttgactatgcaacagctacaattgtctatactaaagctcgtctagcttgattgaaaagaaatgttttatgactaaaa |
199 |
Q |
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| T |
15817338 |
ttagatttattcatactgtaattttaactatgcaacctctactatggtctaatctaatgctcgtcttgcttgatcgaaaagaaatgttttttgaataaaa |
15817239 |
T |
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| Q |
200 |
tttgtattttattatgttttaatttaggcaaa |
231 |
Q |
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||||||| |||||| | ||||||||||||||| |
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| T |
15817238 |
tttgtatgttattaggctttaatttaggcaaa |
15817207 |
T |
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