View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_23 (Length: 284)
Name: NF14726_low_23
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 35755548 - 35755283
Alignment:
| Q |
1 |
gggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtca |
100 |
Q |
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| T |
35755548 |
gggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaacaatatggttggcaaaatagtca |
35755449 |
T |
|
| Q |
101 |
caatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaaca |
200 |
Q |
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| T |
35755448 |
caatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaaatggtgggagtgggaattggggaaca |
35755349 |
T |
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| Q |
201 |
tgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctgaaaatcattat |
266 |
Q |
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| T |
35755348 |
tgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctgaaaatcattat |
35755283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 35785648 - 35785423
Alignment:
| Q |
27 |
gaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcaga |
126 |
Q |
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| T |
35785648 |
gaaacaaactcttgggaacagtatcatgctcctgttgatgaacatgcaaaagaatatgggtggaaaaatagtcagaatgattctcagaggtggattcaga |
35785549 |
T |
|
| Q |
127 |
gggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagaga |
226 |
Q |
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| T |
35785548 |
gggagaactatggtggcaacttgcataacaaat---atcaaggaagaaatggttggaatagtaattgggcaacatgggatgggtataacagaaagagaga |
35785452 |
T |
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| Q |
227 |
aaacaacatgtcatggtctaagagccctg |
255 |
Q |
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| T |
35785451 |
aaacaagatgtctcggtctatgaaccctg |
35785423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 35766163 - 35765926
Alignment:
| Q |
12 |
caacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctc |
111 |
Q |
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| T |
35766163 |
caacatgaaaatgatgaaacaaactcctgggaacgttattgggcttctgttgataaacgtgcaaaagaatatggatggaaaaatgggcagaataattctc |
35766064 |
T |
|
| Q |
112 |
agaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatgggatggata |
211 |
Q |
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| T |
35766063 |
aaaggcggattcagagggagcgctttggtggcaacttgcataacaagtatcaa---ggaagaaatggtgggagtgggaattggggaacatgggatggata |
35765967 |
T |
|
| Q |
212 |
tagcagaaggagagaaaacaacatgtcatggtctaagagccctg |
255 |
Q |
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| T |
35765966 |
taacagaaggagag---acaacatgtcatggtctaagaaccctg |
35765926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 35760694 - 35760467
Alignment:
| Q |
1 |
gggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtca |
100 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||||| |||| | |||| ||| ||||||| |||||||||||||||||| |||| | || |
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| T |
35760694 |
gggaatcgaaccaacatgaaaataatgaaacaaactcttgggaacagtatcgtgctcctgttgttgaacattcaaaagaatatggttggcgaaatggcca |
35760595 |
T |
|
| Q |
101 |
caatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaaca |
200 |
Q |
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||||||| ||| | |||| ||||| |||||| ||||||| ||||||||||||||||| | |||||||||| ||| ||| ||| ||||||||| || |
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| T |
35760594 |
aaatgattatcatggatggaatcagacggagcaatatggtgctgacttgcataacaagt---atcaaggaagaaatggcgggcatggaaattggggagca |
35760498 |
T |
|
| Q |
201 |
tgggatggatatagcagaaggagagaaaaca |
231 |
Q |
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||||||||||||| ||||| ||||||||||| |
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| T |
35760497 |
tgggatggatataacagaaagagagaaaaca |
35760467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 255
Target Start/End: Complemental strand, 35799125 - 35798882
Alignment:
| Q |
3 |
gaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcaca |
102 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| || ||||| |||| | | || |||| | |||||||||| |||| ||||||||| |||| | |
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| T |
35799125 |
gaatcaaaccaacatgaaaataatgaaacaaacttatgtgaacagtatcatgcgcccgttgaacatgctgcaaaagaacatggatggcaaaatggtcaga |
35799026 |
T |
|
| Q |
103 |
atgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaaggaagaactggtgggagtgggaattggggaacatg |
202 |
Q |
| |
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||||||||||| | |||| ||||||||||| |||||||||||||| |||||||||| | |||||||||| | ||||| |||||||||||||| |
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| T |
35799025 |
atgattctcagggatggaatcagagggagcgatatggtggtgactttcataacaagt---atcaaggaagaaat------agtggaaattggggaacatg |
35798935 |
T |
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| Q |
203 |
ggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctg |
255 |
Q |
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||||||||||| ||||| || ||||||||||||||| |||||||||| ||||| |
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| T |
35798934 |
ggatggatataacagaaagaaagaaaacaacatgtcttggtctaagaaccctg |
35798882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 255
Target Start/End: Complemental strand, 35789429 - 35789254
Alignment:
| Q |
71 |
tgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagtaccaacaagga |
170 |
Q |
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||||||||||||||| ||| ||||| |||| ||||||||||| | |||| |||||||||||| |||||||||||||| |||||||||| | |||||| |
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| T |
35789429 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagt---atcaagga |
35789333 |
T |
|
| Q |
171 |
agaactggtgggagtgggaattggggaacatgggatggatatagcagaaggagagaaaacaacatgtcatggtctaagagccctg |
255 |
Q |
| |
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|||| | ||||| |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| |
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| T |
35789332 |
agaaat------agtggaaattgggggacatgggatggatataacagaaggagagaaaacaacatatcatggtctacgaaccctg |
35789254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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