View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_24 (Length: 282)
Name: NF14726_low_24
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 9444643 - 9444899
Alignment:
| Q |
11 |
tataggtacaaaaatcaatatttcnnnnnnnnaa-tgaaccaaatcaatgtttgaactcaaatgtatttttatttgatgattattatataccgtgtagan |
109 |
Q |
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| T |
9444643 |
tataggtacaaaaatcaatatttcttttttttaaatgaaccaaatcaatgtttgaactcaaatgtatttttatttgatgattattatatactgtgtagat |
9444742 |
T |
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| Q |
110 |
nnnnnngtgtgtaaatattatttcttttataggcaacgtttcatacatagatattcataaggcactaggctatggatttgaaatttcctggatgcaagcc |
209 |
Q |
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| T |
9444743 |
ttttttgtgtgtaaatattatttcttttataggcaacgtttcatacatagatattcataaggcactaggctatggatttgaaatttcctggatgcaagcc |
9444842 |
T |
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| Q |
210 |
tcttgtcgttgtgattattgctacctcaaggaccctactagcgagattcagtgttac |
266 |
Q |
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| T |
9444843 |
tcttgtcgttgtgattattgctacctcaaggaccctactagcgagattcagtgttac |
9444899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 266
Target Start/End: Original strand, 9425356 - 9425485
Alignment:
| Q |
137 |
tataggcaacgtttcatacatagatattcataaggcactaggctatggatttgaaatttcctggatgcaagcctcttgtcgttgtgattattgctacctc |
236 |
Q |
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| T |
9425356 |
tataggcaatgtgtcatacatcgatattcataaggcactaggctatggatttgaaatttcctggatactagccttttgtccttgtgatcattgctacctc |
9425455 |
T |
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| Q |
237 |
aaggaccctactagcgagattcagtgttac |
266 |
Q |
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| T |
9425456 |
aaggaccctgccggcgacattctgtgttac |
9425485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 266
Target Start/End: Complemental strand, 9412720 - 9412593
Alignment:
| Q |
139 |
taggcaacgtttcatacatagatattcataaggcactaggctatggatttgaaatttcctggatgcaagcctcttgtcgttgtgattattgctacctcaa |
238 |
Q |
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|||| |||||||| || || |||||||| ||||| || ||||||||||||||||||| | |||| |||||||||||| ||||||| | |||| |||||| |
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| T |
9412720 |
taggtaacgtttcgtatattgatattcacaaggcgttaagctatggatttgaaatttcttcgatgaaagcctcttgtccttgtgatcaatgcttcctcaa |
9412621 |
T |
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| Q |
239 |
ggaccctactagcgagattcagtgttac |
266 |
Q |
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||| ||| | |||||||||| |||||| |
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| T |
9412620 |
cgacactattggcgagattcaatgttac |
9412593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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