View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14726_low_3 (Length: 526)
Name: NF14726_low_3
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 276
Target Start/End: Complemental strand, 32437999 - 32437721
Alignment:
| Q |
2 |
ttactcttcaactaaagttgattatagtttataacacaacaaatcatcattgcaatattttcatatcatcaaacaaaaaattatacaagaaactgttaga |
101 |
Q |
| |
|
||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32437999 |
ttactcttccccaaaagttgattctagtttattacacaacaaatcatcattgcaatattttcatatcatcaaacaaaaaattatacaagaaactgttaga |
32437900 |
T |
|
| Q |
102 |
aatcacatttgagagtgaagataaagtgaaaatctcaacaatatttattttatta----aatatatagaataaacatatgtatgctatatatgaaaatgt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32437899 |
aatcacatttgagagtgaagataaagtgaaaatctcaacaatatttattttattaaataaatatatagaataaacatatgtatgctatatatgaatatgt |
32437800 |
T |
|
| Q |
198 |
aagtaatcaaaattacaagaattgtaactcaatctccaaatgctgatagaaagcaaaatccatcacattgagatatctc |
276 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32437799 |
aaataatcaaaattacaagaattgtaactcaatctccaaatgctgatggaaagcaaaatccatcacattgagatatctc |
32437721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 372 - 504
Target Start/End: Complemental strand, 32437626 - 32437494
Alignment:
| Q |
372 |
gaattcaaagcctaaacctaaatttacaactactgctcctaattctaatagaattattagcactaagactatccaccacaatagtacacctaaccctgaa |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
32437626 |
gaattcaaagcctaaacctaaatttacaactactgctcctaattctaatagaattattagcactaagactatccaccacaattgtacacctgaccctgaa |
32437527 |
T |
|
| Q |
472 |
attaattttgggaagcttcaatttcccaagctt |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
32437526 |
attaattttgggaagcttcaatttcccaagctt |
32437494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University