View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_31 (Length: 252)
Name: NF14726_low_31
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2874421 - 2874591
Alignment:
| Q |
1 |
aaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2874421 |
aaatatttatttgaccgttcataatctttcaattccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcat |
2874520 |
T |
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| Q |
101 |
cgggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacct |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
2874521 |
cgggaaaggaagtatcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacct |
2874591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2889095 - 2889265
Alignment:
| Q |
1 |
aaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcat |
100 |
Q |
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||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
2889095 |
aaatatttatttgcccgttcataatctttcaattccatcaagcacgatgtattgcccagattacaagaaaacctcaagctaacaatttccctatcctcat |
2889194 |
T |
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| Q |
101 |
cgggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacct |
171 |
Q |
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| T |
2889195 |
cgggaaaggaagtttcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacct |
2889265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 3145767 - 3145597
Alignment:
| Q |
1 |
aaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcat |
100 |
Q |
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||||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
3145767 |
aaatatttatttgcccgttcataatctttcaattccatcaagcagcatgcattgcccagattacaagaaaacctcaagctaacaatttccctatcctcat |
3145668 |
T |
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| Q |
101 |
cgggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacct |
171 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
3145667 |
cgggaaaggaagtttcatactttataaacttcagagcctgcattacggtttcagtttcagaaaagatacct |
3145597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 3160634 - 3160464
Alignment:
| Q |
1 |
aaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcat |
100 |
Q |
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||||||||||||| | |||||||||||||||| | |||| |||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||| |
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| T |
3160634 |
aaatatttatttgcctgttcataatctttcaattttatcaagcacgatgcattgctcagattacaagaagacctcaacccaacaatttccttatcctcat |
3160535 |
T |
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| Q |
101 |
cgggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacct |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| |
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| T |
3160534 |
cgggaaaggaagtatcatactttataaacttcagagcctgtattacggtttcagtttcagaaaagatacct |
3160464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 2797700 - 2797533
Alignment:
| Q |
1 |
aaatatttatttgaccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcat |
100 |
Q |
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||||||||||||| |||||||||||||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| |
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| T |
2797700 |
aaatatttatttgcccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcat |
2797601 |
T |
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| Q |
101 |
cgggaaaggaagtatcatactttataaacttcagagcctgcaatacggtttcagtttcagataagata |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
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| T |
2797600 |
cgggaaaggaagtatcatactttataaacttcagagcctgcattacagtttcagtttcagaaaagata |
2797533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 2848723 - 2848878
Alignment:
| Q |
15 |
ccgttcataatctttcaaatccatcaggcacgatgcattgcccagattacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagta |
114 |
Q |
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|||||||||||||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
2848723 |
ccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagta |
2848822 |
T |
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| Q |
115 |
tcatactttataaacttcagagcctgcaatacggtttcagtttcagataagatacc |
170 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| |
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| T |
2848823 |
tcatactttataaagttcagagcctgcattacggtttcagtttcagaaaagatacc |
2848878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 2874711 - 2874775
Alignment:
| Q |
169 |
cctaaagagagcactatgctcataactagagaaactctagtaaccaactctaataatacatcaga |
233 |
Q |
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|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
2874711 |
cctaaagagagcactatgctcataactagcgaagctctagtaaccaactctaataatacatcaga |
2874775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 2889387 - 2889451
Alignment:
| Q |
169 |
cctaaagagagcactatgctcataactagagaaactctagtaaccaactctaataatacatcaga |
233 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
2889387 |
cctaaagagagcactatgctcctaactagagaaactctagtaaccaactctaacaatacttcaga |
2889451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 3145475 - 3145418
Alignment:
| Q |
169 |
cctaaagagagcactatgctcataactagagaaactctagtaaccaactctaataata |
226 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
3145475 |
cctaaagagagcactatgctcctaactagagaaactctagtaaccaactctaacaata |
3145418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 3160342 - 3160276
Alignment:
| Q |
169 |
cctaaagagagcactatgctcataactagaga--aactctagtaaccaactctaataatacatcaga |
233 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
3160342 |
cctaaagagagcactatgctcctaactagagagaaactctagtaaccaactccaataatacttcaga |
3160276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 2797417 - 2797362
Alignment:
| Q |
180 |
cactatgctcataactagaga--aactctagtaaccaactctaataatacatcaga |
233 |
Q |
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|||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
2797417 |
cactatgctcctaactagagagaaactctagtaaccaaatctaataatacatcaga |
2797362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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