View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14726_low_35 (Length: 246)
Name: NF14726_low_35
Description: NF14726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14726_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 99 - 235
Target Start/End: Original strand, 24768231 - 24768367
Alignment:
| Q |
99 |
attctagaatccgtaactctggatatgattaaaataagctacaaaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaa |
198 |
Q |
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| T |
24768231 |
attctagaatccgtaactctagatatgattaaaataagctataaaaaatatatggttcatcaaagaaatgaaagcacagacatcttgttaaattcataaa |
24768330 |
T |
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| Q |
199 |
ctaaaaatcaatataatatatcaaataactcctaata |
235 |
Q |
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| T |
24768331 |
ctaaaaatcaatataatatatcaaataacttctaata |
24768367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 24768081 - 24768214
Alignment:
| Q |
1 |
tctagttcaaattgagtccaacattgaatgtcccatgtaaatgaaattctccacccgtgtccgaattttataattcggagcgggtttttgagttttggat |
100 |
Q |
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|||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||| |||| |
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| T |
24768081 |
tctagttcaaattgaggccaacatagaatgtccaatgtaaatgaaattctccacccgtctccagattttataatttggagcgtgtttttgagtttcggat |
24768180 |
T |
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| Q |
101 |
tctagaatccgtaactctggatatgattaaaata |
134 |
Q |
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| T |
24768181 |
tcttagatccgtaactctggatatgattaaaata |
24768214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 12371098 - 12371192
Alignment:
| Q |
139 |
acaaaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcctaa |
233 |
Q |
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| T |
12371098 |
acaaaaaatgtgtggtgcatcaaagaaatgaaagcataaacatattattaaattcataaataaaaaagaaataaaatatatcaaataactcctaa |
12371192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 24835757 - 24835826
Alignment:
| Q |
65 |
attttataattcggagcgggtttttgagttttggattctagaatccgtaactctggatatgattaaaata |
134 |
Q |
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| T |
24835757 |
attttataattcggagcgtgtttttgagtttcagtttctagaatccgtaactcttgatatgattaaaata |
24835826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 24840649 - 24840718
Alignment:
| Q |
65 |
attttataattcggagcgggtttttgagttttggattctagaatccgtaactctggatatgattaaaata |
134 |
Q |
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| T |
24840649 |
attttataattcggagcgtgtttttgagtttcagtttctagaatccgtaactcttgatatgattaaaata |
24840718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 24842051 - 24842146
Alignment:
| Q |
129 |
aaaataagctacaaaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaat |
224 |
Q |
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| T |
24842051 |
aaaacaagctacgaaaaatgaatggttcatcaagaaaatgaaagcataaacatcttattaaatttctaaactaaaaatcaataaaatatataaaat |
24842146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 24835897 - 24835983
Alignment:
| Q |
142 |
aaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataact |
228 |
Q |
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| T |
24835897 |
aaaaaggtatggttcatcaaagaaatgaaagcatagacaaattattaaatttattagctaaaaatcaatataatatatcaaataact |
24835983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 24756320 - 24756408
Alignment:
| Q |
145 |
aatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcctaa |
233 |
Q |
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| T |
24756320 |
aatgaatggttcatcaagaaaatgaaagaataaacatcttattaaatttatgaactaaaaatcaataaaatatataaaataactcctaa |
24756408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 24837181 - 24837276
Alignment:
| Q |
129 |
aaaataagctacaaaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaat |
224 |
Q |
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| T |
24837181 |
aaaacaagttacgaaaaatgaatggttcatcaagaaaatgaaagcataaacatcttattaaatttctgaactaaaaatcaataaaatatataaaat |
24837276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 24840789 - 24840876
Alignment:
| Q |
142 |
aaaaatgtatggttcatcaaagaaatgaaaa-cacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataact |
228 |
Q |
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||||| ||||||||||||||||||||||||| || | ||| || ||||||| || | |||||||| ||||||||||||||||||||| |
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| T |
24840789 |
aaaaaggtatggttcatcaaagaaatgaaaagcatagacaaattattaaatttattagctaaaaattaatataatatatcaaataact |
24840876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 12414713 - 12414624
Alignment:
| Q |
142 |
aaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcct |
231 |
Q |
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| T |
12414713 |
aaaaatgtgtggttcatcaaagaaatgaaagcatgaacatattaatatattcatgaattaaaaatcaataaaatattttaaataactcct |
12414624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 15698750 - 15698659
Alignment:
| Q |
142 |
aaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcctaa |
233 |
Q |
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||||||||||||| ||||| ||||||||| || | || ||| |||||||||| ||||| ||||||||| |||| || ||||||||||||| |
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| T |
15698750 |
aaaaatgtatggtaaatcaatgaaatgaaagcatactcaccttattaaattcatgaactataaatcaataaaatacattaaataactcctaa |
15698659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 12418064 - 12418153
Alignment:
| Q |
142 |
aaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcct |
231 |
Q |
| |
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|||||||||| |||||||||||||||||| || ||||| || |||| || || || |||||| ||||| ||||| ||||||||||||| |
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| T |
12418064 |
aaaaatgtataattcatcaaagaaatgaaagcatgaacatattattaagtttatgaattaaaaaccaataaaatatttcaaataactcct |
12418153 |
T |
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